miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31768 5' -54.7 NC_006938.1 + 10648 0.65 0.808919
Target:  5'- cGUCCCcGCCGAGuauGUGACGgaggacggcaaggugGUCGAg -3'
miRNA:   3'- -CGGGGuCGGCUCc--UACUGUaa-------------CAGCU- -5'
31768 5' -54.7 NC_006938.1 + 40316 0.66 0.802307
Target:  5'- cGCCUCGGUCGccgaccacucgaAGGGuccgcccaUGACGUcGUCGAa -3'
miRNA:   3'- -CGGGGUCGGC------------UCCU--------ACUGUAaCAGCU- -5'
31768 5' -54.7 NC_006938.1 + 34911 0.66 0.792714
Target:  5'- cGCCCCGGCCGAccuGGuccGAUcaUGgccgCGAa -3'
miRNA:   3'- -CGGGGUCGGCU---CCua-CUGuaACa---GCU- -5'
31768 5' -54.7 NC_006938.1 + 12527 0.66 0.792714
Target:  5'- aGCCCCGGcCCGAGGuuccGGCAggccUGAa -3'
miRNA:   3'- -CGGGGUC-GGCUCCua--CUGUaacaGCU- -5'
31768 5' -54.7 NC_006938.1 + 21100 0.66 0.792714
Target:  5'- gGCCCCAGCaCGAGcg-GAUGcUGUCcGAc -3'
miRNA:   3'- -CGGGGUCG-GCUCcuaCUGUaACAG-CU- -5'
31768 5' -54.7 NC_006938.1 + 11973 0.66 0.773044
Target:  5'- cGCCUCAGCCGcguguGGGAgcUGAUccagGgcGUCGAc -3'
miRNA:   3'- -CGGGGUCGGC-----UCCU--ACUG----UaaCAGCU- -5'
31768 5' -54.7 NC_006938.1 + 28779 0.67 0.749721
Target:  5'- gGCCCCugugauggcaaucuGGuuGAGGGUGGCAguccgGgccgCGAc -3'
miRNA:   3'- -CGGGG--------------UCggCUCCUACUGUaa---Ca---GCU- -5'
31768 5' -54.7 NC_006938.1 + 29321 0.67 0.732076
Target:  5'- cGCCUC-GCCGAGGAUGAgCAcg--CGGu -3'
miRNA:   3'- -CGGGGuCGGCUCCUACU-GUaacaGCU- -5'
31768 5' -54.7 NC_006938.1 + 55594 0.67 0.732076
Target:  5'- -gCCgAGCaCGAGGAUGGgGacGUCGAa -3'
miRNA:   3'- cgGGgUCG-GCUCCUACUgUaaCAGCU- -5'
31768 5' -54.7 NC_006938.1 + 43310 0.68 0.700277
Target:  5'- gGUCCCAGCCGAacaGGGcUGGC-UUGaCGGa -3'
miRNA:   3'- -CGGGGUCGGCU---CCU-ACUGuAACaGCU- -5'
31768 5' -54.7 NC_006938.1 + 20407 0.68 0.700277
Target:  5'- cGCCCCAGCaGAGGGuuUGGCAcaaGagGAg -3'
miRNA:   3'- -CGGGGUCGgCUCCU--ACUGUaa-CagCU- -5'
31768 5' -54.7 NC_006938.1 + 6107 0.68 0.689532
Target:  5'- gGCCCUGGCCGAGGcauggGGCGacuaUGcCGGa -3'
miRNA:   3'- -CGGGGUCGGCUCCua---CUGUa---ACaGCU- -5'
31768 5' -54.7 NC_006938.1 + 2000 0.68 0.678733
Target:  5'- cGCCUgAGCgCGAGGAU-ACAgagugGUCGGc -3'
miRNA:   3'- -CGGGgUCG-GCUCCUAcUGUaa---CAGCU- -5'
31768 5' -54.7 NC_006938.1 + 52382 0.68 0.667891
Target:  5'- gGCCUCGGCgucgagGAGGAUGGCGgcggUGgCGAu -3'
miRNA:   3'- -CGGGGUCGg-----CUCCUACUGUa---ACaGCU- -5'
31768 5' -54.7 NC_006938.1 + 15231 0.68 0.645026
Target:  5'- cGCCCgAGCCGGGGuucaGGCcgucacgcugcucGUUGUUGGu -3'
miRNA:   3'- -CGGGgUCGGCUCCua--CUG-------------UAACAGCU- -5'
31768 5' -54.7 NC_006938.1 + 2190 0.69 0.613386
Target:  5'- aCCCC-GUCGAGGAaGACcuccaUGUCGAg -3'
miRNA:   3'- cGGGGuCGGCUCCUaCUGua---ACAGCU- -5'
31768 5' -54.7 NC_006938.1 + 61996 0.69 0.602496
Target:  5'- aGCUCCGcGCCGAGGugguUGGCGUacgUGaCGAg -3'
miRNA:   3'- -CGGGGU-CGGCUCCu---ACUGUA---ACaGCU- -5'
31768 5' -54.7 NC_006938.1 + 43240 0.69 0.602496
Target:  5'- aGCUCCAGCCagccauGGAUGugGUUGaCGu -3'
miRNA:   3'- -CGGGGUCGGcu----CCUACugUAACaGCu -5'
31768 5' -54.7 NC_006938.1 + 12123 0.7 0.570008
Target:  5'- aGCCCUccacgaugAGC--AGGAUGGCAUUGUUGGc -3'
miRNA:   3'- -CGGGG--------UCGgcUCCUACUGUAACAGCU- -5'
31768 5' -54.7 NC_006938.1 + 17670 0.7 0.570008
Target:  5'- gGCCUgGGCCGAGGGcaucGACAUgccgcuUGUCa- -3'
miRNA:   3'- -CGGGgUCGGCUCCUa---CUGUA------ACAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.