Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31768 | 5' | -54.7 | NC_006938.1 | + | 28779 | 0.67 | 0.749721 |
|
Target: 5'- gGCCCCugugauggcaaucuGGuuGAGGGUGGCAguccgGgccgCGAc -3' miRNA: 3'- -CGGGG--------------UCggCUCCUACUGUaa---Ca---GCU- -5' |
|||||||
| 31768 | 5' | -54.7 | NC_006938.1 | + | 11973 | 0.66 | 0.773044 |
|
Target: 5'- cGCCUCAGCCGcguguGGGAgcUGAUccagGgcGUCGAc -3' miRNA: 3'- -CGGGGUCGGC-----UCCU--ACUG----UaaCAGCU- -5' |
|||||||
| 31768 | 5' | -54.7 | NC_006938.1 | + | 21100 | 0.66 | 0.792714 |
|
Target: 5'- gGCCCCAGCaCGAGcg-GAUGcUGUCcGAc -3' miRNA: 3'- -CGGGGUCG-GCUCcuaCUGUaACAG-CU- -5' |
|||||||
| 31768 | 5' | -54.7 | NC_006938.1 | + | 12527 | 0.66 | 0.792714 |
|
Target: 5'- aGCCCCGGcCCGAGGuuccGGCAggccUGAa -3' miRNA: 3'- -CGGGGUC-GGCUCCua--CUGUaacaGCU- -5' |
|||||||
| 31768 | 5' | -54.7 | NC_006938.1 | + | 34911 | 0.66 | 0.792714 |
|
Target: 5'- cGCCCCGGCCGAccuGGuccGAUcaUGgccgCGAa -3' miRNA: 3'- -CGGGGUCGGCU---CCua-CUGuaACa---GCU- -5' |
|||||||
| 31768 | 5' | -54.7 | NC_006938.1 | + | 40316 | 0.66 | 0.802307 |
|
Target: 5'- cGCCUCGGUCGccgaccacucgaAGGGuccgcccaUGACGUcGUCGAa -3' miRNA: 3'- -CGGGGUCGGC------------UCCU--------ACUGUAaCAGCU- -5' |
|||||||
| 31768 | 5' | -54.7 | NC_006938.1 | + | 10648 | 0.65 | 0.808919 |
|
Target: 5'- cGUCCCcGCCGAGuauGUGACGgaggacggcaaggugGUCGAg -3' miRNA: 3'- -CGGGGuCGGCUCc--UACUGUaa-------------CAGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home