Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31769 | 3' | -65 | NC_006938.1 | + | 34896 | 0.66 | 0.290524 |
Target: 5'- --aGCCCCa-CUCCcaGCCGCGACGGa -3' miRNA: 3'- ugaCGGGGccGAGGc-CGGCGCUGCUc -5' |
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31769 | 3' | -65 | NC_006938.1 | + | 21140 | 0.66 | 0.290524 |
Target: 5'- gGCagGCgUC-GCUCCGGCCGCGucgGCGAa -3' miRNA: 3'- -UGa-CGgGGcCGAGGCCGGCGC---UGCUc -5' |
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31769 | 3' | -65 | NC_006938.1 | + | 14282 | 0.66 | 0.293237 |
Target: 5'- uGCUGCCCUGG-UCCGGgaugagagacuucuuCUugGCGAUGAGc -3' miRNA: 3'- -UGACGGGGCCgAGGCC---------------GG--CGCUGCUC- -5' |
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31769 | 3' | -65 | NC_006938.1 | + | 31697 | 0.66 | 0.30851 |
Target: 5'- cCUGCCacgaCCGGCUCCaGGacacccucgaccgCGCGACGGa -3' miRNA: 3'- uGACGG----GGCCGAGG-CCg------------GCGCUGCUc -5' |
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31769 | 3' | -65 | NC_006938.1 | + | 26972 | 0.66 | 0.30851 |
Target: 5'- cACUGCCCCGGCg-CGGUuacaaguggguguCGUacacgagcuggcacGGCGAGg -3' miRNA: 3'- -UGACGGGGCCGagGCCG-------------GCG--------------CUGCUC- -5' |
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31769 | 3' | -65 | NC_006938.1 | + | 15777 | 0.66 | 0.310639 |
Target: 5'- --aGCCgacgacuugaacaUUGGCUCCGGCCG-GAgGAGa -3' miRNA: 3'- ugaCGG-------------GGCCGAGGCCGGCgCUgCUC- -5' |
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31769 | 3' | -65 | NC_006938.1 | + | 30965 | 0.66 | 0.311351 |
Target: 5'- -gUGCCCCGGC-CCguacggguuGGUCGUGGCa-- -3' miRNA: 3'- ugACGGGGCCGaGG---------CCGGCGCUGcuc -5' |
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31769 | 3' | -65 | NC_006938.1 | + | 33250 | 0.66 | 0.311351 |
Target: 5'- gGCUGaCCCGGCUUCGuGC-G-GACGGGg -3' miRNA: 3'- -UGACgGGGCCGAGGC-CGgCgCUGCUC- -5' |
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31769 | 3' | -65 | NC_006938.1 | + | 12819 | 0.66 | 0.318541 |
Target: 5'- -gUGCCCCGGacgCCaGGCC-CuGCGAGa -3' miRNA: 3'- ugACGGGGCCga-GG-CCGGcGcUGCUC- -5' |
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31769 | 3' | -65 | NC_006938.1 | + | 7899 | 0.66 | 0.318541 |
Target: 5'- gGCUGCUC--GCUCCuGGUCGuUGACGAGu -3' miRNA: 3'- -UGACGGGgcCGAGG-CCGGC-GCUGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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