miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31771 3' -58 NC_006938.1 + 15643 0.67 0.56979
Target:  5'- ----cGUGUCAUCACCGCCUaugaagaugaacUCGCCGg -3'
miRNA:   3'- gcuucUACGGUGGUGGCGGA------------GGUGGC- -5'
31771 3' -58 NC_006938.1 + 17284 0.72 0.283673
Target:  5'- gGAAGAgcucguucGCCACCGCgCGCaccgcguaCUCCGCCGu -3'
miRNA:   3'- gCUUCUa-------CGGUGGUG-GCG--------GAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 17473 0.66 0.612164
Target:  5'- gGggGAUGUCguuuccggccguGCCGuCUGCCUgggCCACCa -3'
miRNA:   3'- gCuuCUACGG------------UGGU-GGCGGA---GGUGGc -5'
31771 3' -58 NC_006938.1 + 18265 0.75 0.184391
Target:  5'- gCGAGGugaccGCCGCCcuggGCCGCCUCCGCa- -3'
miRNA:   3'- -GCUUCua---CGGUGG----UGGCGGAGGUGgc -5'
31771 3' -58 NC_006938.1 + 19295 0.66 0.612164
Target:  5'- aGAGGAgcCCACCGCCaCCUCCcuugaagaggGCCu -3'
miRNA:   3'- gCUUCUacGGUGGUGGcGGAGG----------UGGc -5'
31771 3' -58 NC_006938.1 + 20810 0.7 0.385098
Target:  5'- aGAAG-UGCCugauCUACCGCCgCCGCgCGg -3'
miRNA:   3'- gCUUCuACGGu---GGUGGCGGaGGUG-GC- -5'
31771 3' -58 NC_006938.1 + 24382 0.67 0.548859
Target:  5'- gGGAG-UGCagggucucagaACCACCGCCguugCCugCGg -3'
miRNA:   3'- gCUUCuACGg----------UGGUGGCGGa---GGugGC- -5'
31771 3' -58 NC_006938.1 + 25158 0.69 0.448815
Target:  5'- uGAAGGUcagGCCGCCACCGgagaggaguCCaUCCAUCa -3'
miRNA:   3'- gCUUCUA---CGGUGGUGGC---------GG-AGGUGGc -5'
31771 3' -58 NC_006938.1 + 25625 0.72 0.312457
Target:  5'- aGAGccGAcGCCuCCACCGCCcuggCCACCGc -3'
miRNA:   3'- gCUU--CUaCGGuGGUGGCGGa---GGUGGC- -5'
31771 3' -58 NC_006938.1 + 25950 0.66 0.633481
Target:  5'- uGAGGGcUGCCACCugUcgCUCCAgCGg -3'
miRNA:   3'- gCUUCU-ACGGUGGugGcgGAGGUgGC- -5'
31771 3' -58 NC_006938.1 + 29167 0.66 0.633481
Target:  5'- cCGAGucauAUGCCACCGCUGgCCUgUgACCGa -3'
miRNA:   3'- -GCUUc---UACGGUGGUGGC-GGA-GgUGGC- -5'
31771 3' -58 NC_006938.1 + 30945 0.7 0.39383
Target:  5'- cCGucuGGcgGCCAagaaggaCGCCGCCUUCGCCc -3'
miRNA:   3'- -GCu--UCuaCGGUg------GUGGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 31899 0.66 0.600463
Target:  5'- gGAAcuugGCCGCCGCCcugucgucaaagcGCCUCUGCCc -3'
miRNA:   3'- gCUUcua-CGGUGGUGG-------------CGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 36271 0.69 0.448815
Target:  5'- gGAuGuAUGCCACCGCUGaCCagCGCCGc -3'
miRNA:   3'- gCUuC-UACGGUGGUGGC-GGagGUGGC- -5'
31771 3' -58 NC_006938.1 + 37518 0.69 0.443125
Target:  5'- uCGAGGccGCCGCCGCUggcaagcuggacgagGCCgCCAUCGa -3'
miRNA:   3'- -GCUUCuaCGGUGGUGG---------------CGGaGGUGGC- -5'
31771 3' -58 NC_006938.1 + 40778 0.68 0.487735
Target:  5'- uCGAcGGUGUCAagGCCGuCCUCCAgCGg -3'
miRNA:   3'- -GCUuCUACGGUggUGGC-GGAGGUgGC- -5'
31771 3' -58 NC_006938.1 + 41485 0.66 0.590912
Target:  5'- uCGggGAcuuUGCCcagGCCGCCGCgcagCCGCUc -3'
miRNA:   3'- -GCuuCU---ACGG---UGGUGGCGga--GGUGGc -5'
31771 3' -58 NC_006938.1 + 42173 0.68 0.517938
Target:  5'- cCGAGGGgcuUGUCACCcggACCGgCUCgGCCa -3'
miRNA:   3'- -GCUUCU---ACGGUGG---UGGCgGAGgUGGc -5'
31771 3' -58 NC_006938.1 + 42431 0.66 0.601526
Target:  5'- cCGGAGcgacGCCuGCCACUcCCUCgGCCGg -3'
miRNA:   3'- -GCUUCua--CGG-UGGUGGcGGAGgUGGC- -5'
31771 3' -58 NC_006938.1 + 42755 0.67 0.555115
Target:  5'- gGgcGAUGCCACCACCgagggcaGCgUCCGuuucaacgcguccuCCGa -3'
miRNA:   3'- gCuuCUACGGUGGUGG-------CGgAGGU--------------GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.