miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31771 3' -58 NC_006938.1 + 267 0.66 0.601526
Target:  5'- gGAGGcaccgcGUGCCACCAgCUGCUUCUgucgugccagcgACCGa -3'
miRNA:   3'- gCUUC------UACGGUGGU-GGCGGAGG------------UGGC- -5'
31771 3' -58 NC_006938.1 + 790 0.68 0.468067
Target:  5'- gCGGAGGucuccaguguUGCCAgCCggugugGCCGCCUCCGugcCCGa -3'
miRNA:   3'- -GCUUCU----------ACGGU-GG------UGGCGGAGGU---GGC- -5'
31771 3' -58 NC_006938.1 + 857 0.74 0.226642
Target:  5'- aCGAAGAUgcGCCAgaCGCCGCC-CUGCCGa -3'
miRNA:   3'- -GCUUCUA--CGGUg-GUGGCGGaGGUGGC- -5'
31771 3' -58 NC_006938.1 + 2661 0.66 0.633481
Target:  5'- aCGAGGGUccgaacggaaGCCggggaACCACCGCCaaccugucCCGCCu -3'
miRNA:   3'- -GCUUCUA----------CGG-----UGGUGGCGGa-------GGUGGc -5'
31771 3' -58 NC_006938.1 + 3976 0.71 0.335464
Target:  5'- uGAAGGUGCuUGCCGCgCGCUUCUgaGCCGc -3'
miRNA:   3'- gCUUCUACG-GUGGUG-GCGGAGG--UGGC- -5'
31771 3' -58 NC_006938.1 + 4350 0.69 0.448815
Target:  5'- ------cGCCGCCagaACCGCCUCCAgCa -3'
miRNA:   3'- gcuucuaCGGUGG---UGGCGGAGGUgGc -5'
31771 3' -58 NC_006938.1 + 4977 0.67 0.558251
Target:  5'- gGggGAcagUGCCcgGCCAUccacgagCGCC-CCACCGa -3'
miRNA:   3'- gCuuCU---ACGG--UGGUG-------GCGGaGGUGGC- -5'
31771 3' -58 NC_006938.1 + 7914 0.75 0.189266
Target:  5'- ------gGCCGCCcuuGCCGCCUCCGCUGg -3'
miRNA:   3'- gcuucuaCGGUGG---UGGCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 10431 0.68 0.496712
Target:  5'- uGggGAUGUucggcgCGCCAacugcguCCGCCcacUCCGCCGu -3'
miRNA:   3'- gCuuCUACG------GUGGU-------GGCGG---AGGUGGC- -5'
31771 3' -58 NC_006938.1 + 11087 0.7 0.402689
Target:  5'- uGGAGcgGCaCAUCGCCGCCUUgGCa- -3'
miRNA:   3'- gCUUCuaCG-GUGGUGGCGGAGgUGgc -5'
31771 3' -58 NC_006938.1 + 11172 0.71 0.359683
Target:  5'- ------cGCCACCGCCGCCaUCCuccucgacGCCGa -3'
miRNA:   3'- gcuucuaCGGUGGUGGCGG-AGG--------UGGC- -5'
31771 3' -58 NC_006938.1 + 11248 0.74 0.207761
Target:  5'- uGucGAUGCCGCCcugGCCGCCgaugaggaucgagCCGCCGu -3'
miRNA:   3'- gCuuCUACGGUGG---UGGCGGa------------GGUGGC- -5'
31771 3' -58 NC_006938.1 + 11342 0.68 0.477851
Target:  5'- -aAAGA-GCC-CU-CCGCCUCCACCa -3'
miRNA:   3'- gcUUCUaCGGuGGuGGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 11373 1.08 0.000827
Target:  5'- cCGAAGAUGCCACCACCGCCUCCACCGc -3'
miRNA:   3'- -GCUUCUACGGUGGUGGCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 11880 0.7 0.411673
Target:  5'- gGAAGAUcUCGagGCCGUCUCCACCa -3'
miRNA:   3'- gCUUCUAcGGUggUGGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 11951 0.7 0.39383
Target:  5'- aGAAGuucucUGaCCguGCCACCGCCUCaGCCGc -3'
miRNA:   3'- gCUUCu----AC-GG--UGGUGGCGGAGgUGGC- -5'
31771 3' -58 NC_006938.1 + 12461 0.68 0.477851
Target:  5'- uGcuGAUcGCCACgAUCGCCUuCCGCUGg -3'
miRNA:   3'- gCuuCUA-CGGUGgUGGCGGA-GGUGGC- -5'
31771 3' -58 NC_006938.1 + 12849 0.78 0.127013
Target:  5'- gGAGGAUGCCAgCCugUGCCUCuugggcgcucgCACCGg -3'
miRNA:   3'- gCUUCUACGGU-GGugGCGGAG-----------GUGGC- -5'
31771 3' -58 NC_006938.1 + 14537 0.67 0.56979
Target:  5'- aCGAGuGUGCCGCCAUUGgCUCgGCgGu -3'
miRNA:   3'- -GCUUcUACGGUGGUGGCgGAGgUGgC- -5'
31771 3' -58 NC_006938.1 + 15153 0.69 0.458387
Target:  5'- aGGAGGUGUUguagGCCgugGCCGCCUCgAUCGu -3'
miRNA:   3'- gCUUCUACGG----UGG---UGGCGGAGgUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.