miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31771 3' -58 NC_006938.1 + 11373 1.08 0.000827
Target:  5'- cCGAAGAUGCCACCACCGCCUCCACCGc -3'
miRNA:   3'- -GCUUCUACGGUGGUGGCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 44242 0.8 0.088978
Target:  5'- uGAAGAaccgUGCCACCuCCgGCCUCCGCCc -3'
miRNA:   3'- gCUUCU----ACGGUGGuGG-CGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 12849 0.78 0.127013
Target:  5'- gGAGGAUGCCAgCCugUGCCUCuugggcgcucgCACCGg -3'
miRNA:   3'- gCUUCUACGGU-GGugGCGGAG-----------GUGGC- -5'
31771 3' -58 NC_006938.1 + 18265 0.75 0.184391
Target:  5'- gCGAGGugaccGCCGCCcuggGCCGCCUCCGCa- -3'
miRNA:   3'- -GCUUCua---CGGUGG----UGGCGGAGGUGgc -5'
31771 3' -58 NC_006938.1 + 51021 0.75 0.184391
Target:  5'- uCGAcGcUGCCACCGggGCCUCCGCCGc -3'
miRNA:   3'- -GCUuCuACGGUGGUggCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 7914 0.75 0.189266
Target:  5'- ------gGCCGCCcuuGCCGCCUCCGCUGg -3'
miRNA:   3'- gcuucuaCGGUGG---UGGCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 11248 0.74 0.207761
Target:  5'- uGucGAUGCCGCCcugGCCGCCgaugaggaucgagCCGCCGu -3'
miRNA:   3'- gCuuCUACGGUGG---UGGCGGa------------GGUGGC- -5'
31771 3' -58 NC_006938.1 + 44215 0.74 0.215365
Target:  5'- uCGAcGGUGCCauuGCUGCUGCCUUCACUGg -3'
miRNA:   3'- -GCUuCUACGG---UGGUGGCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 857 0.74 0.226642
Target:  5'- aCGAAGAUgcGCCAgaCGCCGCC-CUGCCGa -3'
miRNA:   3'- -GCUUCUA--CGGUg-GUGGCGGaGGUGGC- -5'
31771 3' -58 NC_006938.1 + 17284 0.72 0.283673
Target:  5'- gGAAGAgcucguucGCCACCGCgCGCaccgcguaCUCCGCCGu -3'
miRNA:   3'- gCUUCUa-------CGGUGGUG-GCG--------GAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 25625 0.72 0.312457
Target:  5'- aGAGccGAcGCCuCCACCGCCcuggCCACCGc -3'
miRNA:   3'- gCUU--CUaCGGuGGUGGCGGa---GGUGGC- -5'
31771 3' -58 NC_006938.1 + 3976 0.71 0.335464
Target:  5'- uGAAGGUGCuUGCCGCgCGCUUCUgaGCCGc -3'
miRNA:   3'- gCUUCUACG-GUGGUG-GCGGAGG--UGGC- -5'
31771 3' -58 NC_006938.1 + 11172 0.71 0.359683
Target:  5'- ------cGCCACCGCCGCCaUCCuccucgacGCCGa -3'
miRNA:   3'- gcuucuaCGGUGGUGGCGG-AGG--------UGGC- -5'
31771 3' -58 NC_006938.1 + 20810 0.7 0.385098
Target:  5'- aGAAG-UGCCugauCUACCGCCgCCGCgCGg -3'
miRNA:   3'- gCUUCuACGGu---GGUGGCGGaGGUG-GC- -5'
31771 3' -58 NC_006938.1 + 30945 0.7 0.39383
Target:  5'- cCGucuGGcgGCCAagaaggaCGCCGCCUUCGCCc -3'
miRNA:   3'- -GCu--UCuaCGGUg------GUGGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 11951 0.7 0.39383
Target:  5'- aGAAGuucucUGaCCguGCCACCGCCUCaGCCGc -3'
miRNA:   3'- gCUUCu----AC-GG--UGGUGGCGGAGgUGGC- -5'
31771 3' -58 NC_006938.1 + 42811 0.7 0.402689
Target:  5'- gCGAAGu--UCACCuuguCCGCCUCCAUCa -3'
miRNA:   3'- -GCUUCuacGGUGGu---GGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 11087 0.7 0.402689
Target:  5'- uGGAGcgGCaCAUCGCCGCCUUgGCa- -3'
miRNA:   3'- gCUUCuaCG-GUGGUGGCGGAGgUGgc -5'
31771 3' -58 NC_006938.1 + 11880 0.7 0.411673
Target:  5'- gGAAGAUcUCGagGCCGUCUCCACCa -3'
miRNA:   3'- gCUUCUAcGGUggUGGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 49894 0.69 0.430008
Target:  5'- gGGAGGuUGCCACaguGCCGCgCUCCAUg- -3'
miRNA:   3'- gCUUCU-ACGGUGg--UGGCG-GAGGUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.