miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31771 3' -58 NC_006938.1 + 49609 0.66 0.612164
Target:  5'- cCGAgGGAUGCCuCCAagguUCGCCgagaUCACCGa -3'
miRNA:   3'- -GCU-UCUACGGuGGU----GGCGGa---GGUGGC- -5'
31771 3' -58 NC_006938.1 + 40778 0.68 0.487735
Target:  5'- uCGAcGGUGUCAagGCCGuCCUCCAgCGg -3'
miRNA:   3'- -GCUuCUACGGUggUGGC-GGAGGUgGC- -5'
31771 3' -58 NC_006938.1 + 48377 0.67 0.538482
Target:  5'- uCGGAGAccGUCGgCACUGUCUCCACg- -3'
miRNA:   3'- -GCUUCUa-CGGUgGUGGCGGAGGUGgc -5'
31771 3' -58 NC_006938.1 + 51405 0.67 0.538482
Target:  5'- gCGuguGGccgGCCAUCGCCGCCgCUGCCa -3'
miRNA:   3'- -GCu--UCua-CGGUGGUGGCGGaGGUGGc -5'
31771 3' -58 NC_006938.1 + 42755 0.67 0.555115
Target:  5'- gGgcGAUGCCACCACCgagggcaGCgUCCGuuucaacgcguccuCCGa -3'
miRNA:   3'- gCuuCUACGGUGGUGG-------CGgAGGU--------------GGC- -5'
31771 3' -58 NC_006938.1 + 14537 0.67 0.56979
Target:  5'- aCGAGuGUGCCGCCAUUGgCUCgGCgGu -3'
miRNA:   3'- -GCUUcUACGGUGGUGGCgGAGgUGgC- -5'
31771 3' -58 NC_006938.1 + 41485 0.66 0.590912
Target:  5'- uCGggGAcuuUGCCcagGCCGCCGCgcagCCGCUc -3'
miRNA:   3'- -GCuuCU---ACGG---UGGUGGCGga--GGUGGc -5'
31771 3' -58 NC_006938.1 + 47449 0.66 0.601526
Target:  5'- aGAAGGgcGUCAUCACCGaCCUCgaCGCCu -3'
miRNA:   3'- gCUUCUa-CGGUGGUGGC-GGAG--GUGGc -5'
31771 3' -58 NC_006938.1 + 42431 0.66 0.601526
Target:  5'- cCGGAGcgacGCCuGCCACUcCCUCgGCCGg -3'
miRNA:   3'- -GCUUCua--CGG-UGGUGGcGGAGgUGGC- -5'
31771 3' -58 NC_006938.1 + 54414 0.68 0.487735
Target:  5'- cCGGAGucgagGCCACCACUGuCCUCgCgGCCc -3'
miRNA:   3'- -GCUUCua---CGGUGGUGGC-GGAG-G-UGGc -5'
31771 3' -58 NC_006938.1 + 12461 0.68 0.477851
Target:  5'- uGcuGAUcGCCACgAUCGCCUuCCGCUGg -3'
miRNA:   3'- gCuuCUA-CGGUGgUGGCGGA-GGUGGC- -5'
31771 3' -58 NC_006938.1 + 37518 0.69 0.443125
Target:  5'- uCGAGGccGCCGCCGCUggcaagcuggacgagGCCgCCAUCGa -3'
miRNA:   3'- -GCUUCuaCGGUGGUGG---------------CGGaGGUGGC- -5'
31771 3' -58 NC_006938.1 + 51021 0.75 0.184391
Target:  5'- uCGAcGcUGCCACCGggGCCUCCGCCGc -3'
miRNA:   3'- -GCUuCuACGGUGGUggCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 44215 0.74 0.215365
Target:  5'- uCGAcGGUGCCauuGCUGCUGCCUUCACUGg -3'
miRNA:   3'- -GCUuCUACGG---UGGUGGCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 11172 0.71 0.359683
Target:  5'- ------cGCCACCGCCGCCaUCCuccucgacGCCGa -3'
miRNA:   3'- gcuucuaCGGUGGUGGCGG-AGG--------UGGC- -5'
31771 3' -58 NC_006938.1 + 20810 0.7 0.385098
Target:  5'- aGAAG-UGCCugauCUACCGCCgCCGCgCGg -3'
miRNA:   3'- gCUUCuACGGu---GGUGGCGGaGGUG-GC- -5'
31771 3' -58 NC_006938.1 + 11951 0.7 0.39383
Target:  5'- aGAAGuucucUGaCCguGCCACCGCCUCaGCCGc -3'
miRNA:   3'- gCUUCu----AC-GG--UGGUGGCGGAGgUGGC- -5'
31771 3' -58 NC_006938.1 + 30945 0.7 0.39383
Target:  5'- cCGucuGGcgGCCAagaaggaCGCCGCCUUCGCCc -3'
miRNA:   3'- -GCu--UCuaCGGUg------GUGGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 11087 0.7 0.402689
Target:  5'- uGGAGcgGCaCAUCGCCGCCUUgGCa- -3'
miRNA:   3'- gCUUCuaCG-GUGGUGGCGGAGgUGgc -5'
31771 3' -58 NC_006938.1 + 11880 0.7 0.411673
Target:  5'- gGAAGAUcUCGagGCCGUCUCCACCa -3'
miRNA:   3'- gCUUCUAcGGUggUGGCGGAGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.