miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31772 5' -57.3 NC_006938.1 + 10984 1.1 0.000647
Target:  5'- gCUCCACGCUCCACGUCGUCUGGCAGCc -3'
miRNA:   3'- -GAGGUGCGAGGUGCAGCAGACCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 46160 0.77 0.149867
Target:  5'- cCUCCGCGCUCCcuuccaggaggggaGgGUggacaUGUCUGGCGGCu -3'
miRNA:   3'- -GAGGUGCGAGG--------------UgCA-----GCAGACCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 34686 0.75 0.204108
Target:  5'- cCUCCGCGCagUCCGgGUCGUCgaucugcacgacucGGCAGUu -3'
miRNA:   3'- -GAGGUGCG--AGGUgCAGCAGa-------------CCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 41711 0.73 0.273217
Target:  5'- aUCgACGCgaUCACGUCGUCUGggaucucGCAGCg -3'
miRNA:   3'- gAGgUGCGa-GGUGCAGCAGAC-------CGUCG- -5'
31772 5' -57.3 NC_006938.1 + 44001 0.72 0.30132
Target:  5'- aCUCUcCGCUCCGCGauguucaUCgGUCUGGCcucGGCg -3'
miRNA:   3'- -GAGGuGCGAGGUGC-------AG-CAGACCG---UCG- -5'
31772 5' -57.3 NC_006938.1 + 43817 0.72 0.332386
Target:  5'- gUCCAgCGCcuUCCGCaccgCGUCgGGCAGCg -3'
miRNA:   3'- gAGGU-GCG--AGGUGca--GCAGaCCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 39976 0.71 0.356569
Target:  5'- cCUCCGuCGC-CCACGgcuucaCGUCUGGCGa- -3'
miRNA:   3'- -GAGGU-GCGaGGUGCa-----GCAGACCGUcg -5'
31772 5' -57.3 NC_006938.1 + 42286 0.7 0.408531
Target:  5'- aUCCGCuuccGCUCCGCGUCGaacagCgacgGGuCGGCg -3'
miRNA:   3'- gAGGUG----CGAGGUGCAGCa----Ga---CC-GUCG- -5'
31772 5' -57.3 NC_006938.1 + 41915 0.69 0.455277
Target:  5'- -aCCGCGCgcggcCCACGUCGccCUGGUcaccgccguccAGCa -3'
miRNA:   3'- gaGGUGCGa----GGUGCAGCa-GACCG-----------UCG- -5'
31772 5' -57.3 NC_006938.1 + 57785 0.69 0.459141
Target:  5'- uCUCCGagaGCUCCgucACGUucucgucgacggccaCGUCUGGUGGUg -3'
miRNA:   3'- -GAGGUg--CGAGG---UGCA---------------GCAGACCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 11599 0.69 0.46497
Target:  5'- cCUCCACGUccUUCGCGgcaGaUCgGGCGGCa -3'
miRNA:   3'- -GAGGUGCG--AGGUGCag-C-AGaCCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 62679 0.69 0.473785
Target:  5'- -aCCugGUaCCACGUCGcugccacUCggcagGGCGGCg -3'
miRNA:   3'- gaGGugCGaGGUGCAGC-------AGa----CCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 30346 0.69 0.474769
Target:  5'- aCUCCGuuCUCCACGUCGUagaUGGaggaguCAGCc -3'
miRNA:   3'- -GAGGUgcGAGGUGCAGCAg--ACC------GUCG- -5'
31772 5' -57.3 NC_006938.1 + 49910 0.69 0.474769
Target:  5'- -gCCGCGCUCCAUGagcaUGUCaGcGCGGCc -3'
miRNA:   3'- gaGGUGCGAGGUGCa---GCAGaC-CGUCG- -5'
31772 5' -57.3 NC_006938.1 + 35363 0.69 0.483676
Target:  5'- -gCCGCGCUCU-CGUCGUCUgugggacGGgAGUg -3'
miRNA:   3'- gaGGUGCGAGGuGCAGCAGA-------CCgUCG- -5'
31772 5' -57.3 NC_006938.1 + 5459 0.69 0.484671
Target:  5'- cCUCCAgGCugguggucucgUCCguuuggaaggGCGUCGUCgUGGCAGg -3'
miRNA:   3'- -GAGGUgCG-----------AGG----------UGCAGCAG-ACCGUCg -5'
31772 5' -57.3 NC_006938.1 + 32689 0.68 0.535542
Target:  5'- cCUUCAgaaugUGCUCgGgGUCGUC-GGCGGCc -3'
miRNA:   3'- -GAGGU-----GCGAGgUgCAGCAGaCCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 25961 0.68 0.556424
Target:  5'- -aCCuguCGCUCCAgCGgggcCGUCUgGGUGGCg -3'
miRNA:   3'- gaGGu--GCGAGGU-GCa---GCAGA-CCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 48098 0.68 0.556424
Target:  5'- -gCC-CGCUCCugGUCGa--GGcCAGCg -3'
miRNA:   3'- gaGGuGCGAGGugCAGCagaCC-GUCG- -5'
31772 5' -57.3 NC_006938.1 + 2864 0.67 0.566955
Target:  5'- aUCauaACGCUCCGagGUCGcgaCUGGCGGg -3'
miRNA:   3'- gAGg--UGCGAGGUg-CAGCa--GACCGUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.