miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31772 5' -57.3 NC_006938.1 + 44001 0.72 0.30132
Target:  5'- aCUCUcCGCUCCGCGauguucaUCgGUCUGGCcucGGCg -3'
miRNA:   3'- -GAGGuGCGAGGUGC-------AG-CAGACCG---UCG- -5'
31772 5' -57.3 NC_006938.1 + 57985 0.67 0.609501
Target:  5'- gCUCCcUGCUCCA-GUCG-CUGGacucCGGCu -3'
miRNA:   3'- -GAGGuGCGAGGUgCAGCaGACC----GUCG- -5'
31772 5' -57.3 NC_006938.1 + 6774 0.67 0.588158
Target:  5'- uUCCAUGa--CAUgGUCG-CUGGCGGCg -3'
miRNA:   3'- gAGGUGCgagGUG-CAGCaGACCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 2864 0.67 0.566955
Target:  5'- aUCauaACGCUCCGagGUCGcgaCUGGCGGg -3'
miRNA:   3'- gAGg--UGCGAGGUg-CAGCa--GACCGUCg -5'
31772 5' -57.3 NC_006938.1 + 62679 0.69 0.473785
Target:  5'- -aCCugGUaCCACGUCGcugccacUCggcagGGCGGCg -3'
miRNA:   3'- gaGGugCGaGGUGCAGC-------AGa----CCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 57785 0.69 0.459141
Target:  5'- uCUCCGagaGCUCCgucACGUucucgucgacggccaCGUCUGGUGGUg -3'
miRNA:   3'- -GAGGUg--CGAGG---UGCA---------------GCAGACCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 39976 0.71 0.356569
Target:  5'- cCUCCGuCGC-CCACGgcuucaCGUCUGGCGa- -3'
miRNA:   3'- -GAGGU-GCGaGGUGCa-----GCAGACCGUcg -5'
31772 5' -57.3 NC_006938.1 + 48098 0.68 0.556424
Target:  5'- -gCC-CGCUCCugGUCGa--GGcCAGCg -3'
miRNA:   3'- gaGGuGCGAGGugCAGCagaCC-GUCG- -5'
31772 5' -57.3 NC_006938.1 + 25961 0.68 0.556424
Target:  5'- -aCCuguCGCUCCAgCGgggcCGUCUgGGUGGCg -3'
miRNA:   3'- gaGGu--GCGAGGU-GCa---GCAGA-CCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 47805 0.67 0.566955
Target:  5'- -gCCAgGUa-CAUGUCGUCUGGC-GCg -3'
miRNA:   3'- gaGGUgCGagGUGCAGCAGACCGuCG- -5'
31772 5' -57.3 NC_006938.1 + 7116 0.67 0.588158
Target:  5'- aCUCCAUGCugUCCGCGUCGa--GG-AGCc -3'
miRNA:   3'- -GAGGUGCG--AGGUGCAGCagaCCgUCG- -5'
31772 5' -57.3 NC_006938.1 + 6245 0.67 0.609501
Target:  5'- -cCCGCGCUUCACGaacuugaucuggUCGUCUGacuccaCGGCc -3'
miRNA:   3'- gaGGUGCGAGGUGC------------AGCAGACc-----GUCG- -5'
31772 5' -57.3 NC_006938.1 + 44518 0.67 0.609501
Target:  5'- gUCCGCcGCgaccauggCCGCcuUUGUCUGGuCAGCa -3'
miRNA:   3'- gAGGUG-CGa-------GGUGc-AGCAGACC-GUCG- -5'
31772 5' -57.3 NC_006938.1 + 38130 0.67 0.619134
Target:  5'- gCUCCACGUgcaCCGgcUCGUCgccgauguagccgUGGCAGUa -3'
miRNA:   3'- -GAGGUGCGa--GGUgcAGCAG-------------ACCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 37863 0.66 0.630918
Target:  5'- -gCCGCGCUCCGuCGUUGagcUgUGGCAu- -3'
miRNA:   3'- gaGGUGCGAGGU-GCAGC---AgACCGUcg -5'
31772 5' -57.3 NC_006938.1 + 26896 0.66 0.641632
Target:  5'- uCUCCAgGCUCCGaagcCGcUCaUCacagGGCGGCa -3'
miRNA:   3'- -GAGGUgCGAGGU----GC-AGcAGa---CCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 41853 0.66 0.645916
Target:  5'- cCUCCcCGUgcuggUCCAgGUCGUCUaucucagagagccggGGCAGg -3'
miRNA:   3'- -GAGGuGCG-----AGGUgCAGCAGA---------------CCGUCg -5'
31772 5' -57.3 NC_006938.1 + 47298 0.66 0.663027
Target:  5'- -cCCAgCGCUCCggcACGUCGUgccaCUGGaUGGCc -3'
miRNA:   3'- gaGGU-GCGAGG---UGCAGCA----GACC-GUCG- -5'
31772 5' -57.3 NC_006938.1 + 34067 0.66 0.673688
Target:  5'- cCUCCucACGacggCCuGCG-CGcCUGGCAGCa -3'
miRNA:   3'- -GAGG--UGCga--GG-UGCaGCaGACCGUCG- -5'
31772 5' -57.3 NC_006938.1 + 10984 1.1 0.000647
Target:  5'- gCUCCACGCUCCACGUCGUCUGGCAGCc -3'
miRNA:   3'- -GAGGUGCGAGGUGCAGCAGACCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.