miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31774 5' -58.7 NC_006938.1 + 41780 0.66 0.613654
Target:  5'- gAGCGggaGGgauacCGGUCCggguugUCCGGGUCCa -3'
miRNA:   3'- -UCGCg--UCa----GCUAGGgga---AGGCCCAGG- -5'
31774 5' -58.7 NC_006938.1 + 40827 0.66 0.603101
Target:  5'- aAGCGCcgggAGUCGGga-CCggCCGGGaCCa -3'
miRNA:   3'- -UCGCG----UCAGCUaggGGaaGGCCCaGG- -5'
31774 5' -58.7 NC_006938.1 + 36981 0.66 0.603101
Target:  5'- gAGCGCGGacggcUCuGAUCCUCaugcugUCCGaGGUCa -3'
miRNA:   3'- -UCGCGUC-----AG-CUAGGGGa-----AGGC-CCAGg -5'
31774 5' -58.7 NC_006938.1 + 45888 0.66 0.602047
Target:  5'- aAGCgGCAuGUCGAUgCCCUcgcccaggcccagUCCaGGUCg -3'
miRNA:   3'- -UCG-CGU-CAGCUAgGGGA-------------AGGcCCAGg -5'
31774 5' -58.7 NC_006938.1 + 35769 0.66 0.561196
Target:  5'- uGCuGCAGUCGAUCgugaccacccguCCCUUCgaGGGgcagaCCa -3'
miRNA:   3'- uCG-CGUCAGCUAG------------GGGAAGg-CCCa----GG- -5'
31774 5' -58.7 NC_006938.1 + 10070 0.66 0.561196
Target:  5'- uGCGUAGUUG-UCCCUgcgaCaGGUCCg -3'
miRNA:   3'- uCGCGUCAGCuAGGGGaag-GcCCAGG- -5'
31774 5' -58.7 NC_006938.1 + 48423 0.67 0.54053
Target:  5'- gAGCGa---CGAccgCCCCUccguUCCGGGUCUc -3'
miRNA:   3'- -UCGCgucaGCUa--GGGGA----AGGCCCAGG- -5'
31774 5' -58.7 NC_006938.1 + 43840 0.67 0.54053
Target:  5'- cGgGCAG-CGGUggCUggUCCGGGUCCg -3'
miRNA:   3'- uCgCGUCaGCUAggGGa-AGGCCCAGG- -5'
31774 5' -58.7 NC_006938.1 + 59509 0.67 0.500033
Target:  5'- uGGCGCGG-CGGaugccagCCUCgUCCGGG-CCa -3'
miRNA:   3'- -UCGCGUCaGCUa------GGGGaAGGCCCaGG- -5'
31774 5' -58.7 NC_006938.1 + 62390 0.68 0.491102
Target:  5'- cGCGCAGUCucgguucggaggcaaGUCUCUUguccUCGGGUCCg -3'
miRNA:   3'- uCGCGUCAGc--------------UAGGGGAa---GGCCCAGG- -5'
31774 5' -58.7 NC_006938.1 + 42104 0.7 0.34639
Target:  5'- --aGCAGU-GGUCCCCg-CCGaGGUCCg -3'
miRNA:   3'- ucgCGUCAgCUAGGGGaaGGC-CCAGG- -5'
31774 5' -58.7 NC_006938.1 + 41058 0.73 0.223897
Target:  5'- gAGCGCAcUCGccUCCuCCguggCCGGGUCCu -3'
miRNA:   3'- -UCGCGUcAGCu-AGG-GGaa--GGCCCAGG- -5'
31774 5' -58.7 NC_006938.1 + 8540 1.12 0.000393
Target:  5'- cAGCGCAGUCGAUCCCCUUCCGGGUCCg -3'
miRNA:   3'- -UCGCGUCAGCUAGGGGAAGGCCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.