Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 22277 | 0.66 | 0.795763 |
Target: 5'- gCCu-GCcaGGCCGUCGcCGGGAGCGc -3' miRNA: 3'- -GGucUGcaCCGGCAGCuGCUCUUGCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 49474 | 0.66 | 0.786234 |
Target: 5'- uCCAGuCGgccGCCGUCGACGAcacCGUc -3' miRNA: 3'- -GGUCuGCac-CGGCAGCUGCUcuuGCA- -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 18132 | 0.66 | 0.786234 |
Target: 5'- aCCGG-UGUGGCgGUgGGaccCGAGGACGc -3' miRNA: 3'- -GGUCuGCACCGgCAgCU---GCUCUUGCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 44022 | 0.67 | 0.76673 |
Target: 5'- aUCGGuC-UGGCC-UCGGCGGGAAUGg -3' miRNA: 3'- -GGUCuGcACCGGcAGCUGCUCUUGCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 4830 | 0.67 | 0.76673 |
Target: 5'- aCCuGGCaccGGCCGaggaguUCGGCGAGGugGUc -3' miRNA: 3'- -GGuCUGca-CCGGC------AGCUGCUCUugCA- -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 14613 | 0.67 | 0.736518 |
Target: 5'- gCCAGAUGgcUGGCUGcCGACGgucgGGAACc- -3' miRNA: 3'- -GGUCUGC--ACCGGCaGCUGC----UCUUGca -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 15163 | 0.67 | 0.736518 |
Target: 5'- gUAGGcCGUGGCCGccucgaUCGugGAGAcagugccgACGg -3' miRNA: 3'- gGUCU-GCACCGGC------AGCugCUCU--------UGCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 17891 | 0.67 | 0.726233 |
Target: 5'- cCCGcuAUGUGGgCGUcuaCGGCGAGGACGa -3' miRNA: 3'- -GGUc-UGCACCgGCA---GCUGCUCUUGCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 2361 | 0.67 | 0.726233 |
Target: 5'- aCCAGACcaaGGCCGUCGcCGAcAugGc -3' miRNA: 3'- -GGUCUGca-CCGGCAGCuGCUcUugCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 51835 | 0.68 | 0.71586 |
Target: 5'- gCAGAccacucucCGUGGCaccaUCGACGAGGugGa -3' miRNA: 3'- gGUCU--------GCACCGgc--AGCUGCUCUugCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 41032 | 0.68 | 0.71586 |
Target: 5'- uCCAGGCGUcGCUGuUCGcgucuCGGGAGCGc -3' miRNA: 3'- -GGUCUGCAcCGGC-AGCu----GCUCUUGCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 15454 | 0.68 | 0.705409 |
Target: 5'- gCAGAUGUgGGCCGcuggccUCGACcaGGAGCGg -3' miRNA: 3'- gGUCUGCA-CCGGC------AGCUGc-UCUUGCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 58627 | 0.68 | 0.684312 |
Target: 5'- --uGAUGUGGUCGUCGuCgGAGAACu- -3' miRNA: 3'- gguCUGCACCGGCAGCuG-CUCUUGca -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 37540 | 0.69 | 0.641632 |
Target: 5'- gCUGGACGaGGCCGccaUCGAgGAGAuCGUc -3' miRNA: 3'- -GGUCUGCaCCGGC---AGCUgCUCUuGCA- -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 51636 | 0.69 | 0.630918 |
Target: 5'- -uGGACGgGGCgGUCGGCGAGGuCa- -3' miRNA: 3'- ggUCUGCaCCGgCAGCUGCUCUuGca -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 37767 | 0.69 | 0.627703 |
Target: 5'- cCCuGAUGcUGGCCGaUCGcaucuucgagguccGCGAGGACGa -3' miRNA: 3'- -GGuCUGC-ACCGGC-AGC--------------UGCUCUUGCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 5244 | 0.69 | 0.620205 |
Target: 5'- cUCGGagaccGCGUGGCUGUUGACGA--ACGg -3' miRNA: 3'- -GGUC-----UGCACCGGCAGCUGCUcuUGCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 21141 | 0.69 | 0.620205 |
Target: 5'- gCAGGCGUcgcuccGGCCGcgUCGGCGaAGAACu- -3' miRNA: 3'- gGUCUGCA------CCGGC--AGCUGC-UCUUGca -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 27036 | 0.7 | 0.588158 |
Target: 5'- --cGACG-GGCCagGUCGGCGAGAGgGa -3' miRNA: 3'- gguCUGCaCCGG--CAGCUGCUCUUgCa -5' |
|||||||
31775 | 3' | -55.1 | NC_006938.1 | + | 25660 | 0.7 | 0.577535 |
Target: 5'- uCCAGGCGUGGgucaCGcCGAgCGAGAcACGg -3' miRNA: 3'- -GGUCUGCACCg---GCaGCU-GCUCU-UGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home