miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31775 3' -55.1 NC_006938.1 + 15454 0.68 0.705409
Target:  5'- gCAGAUGUgGGCCGcuggccUCGACcaGGAGCGg -3'
miRNA:   3'- gGUCUGCA-CCGGC------AGCUGc-UCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 51835 0.68 0.71586
Target:  5'- gCAGAccacucucCGUGGCaccaUCGACGAGGugGa -3'
miRNA:   3'- gGUCU--------GCACCGgc--AGCUGCUCUugCa -5'
31775 3' -55.1 NC_006938.1 + 41032 0.68 0.71586
Target:  5'- uCCAGGCGUcGCUGuUCGcgucuCGGGAGCGc -3'
miRNA:   3'- -GGUCUGCAcCGGC-AGCu----GCUCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 17891 0.67 0.726233
Target:  5'- cCCGcuAUGUGGgCGUcuaCGGCGAGGACGa -3'
miRNA:   3'- -GGUc-UGCACCgGCA---GCUGCUCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 2361 0.67 0.726233
Target:  5'- aCCAGACcaaGGCCGUCGcCGAcAugGc -3'
miRNA:   3'- -GGUCUGca-CCGGCAGCuGCUcUugCa -5'
31775 3' -55.1 NC_006938.1 + 15163 0.67 0.736518
Target:  5'- gUAGGcCGUGGCCGccucgaUCGugGAGAcagugccgACGg -3'
miRNA:   3'- gGUCU-GCACCGGC------AGCugCUCU--------UGCa -5'
31775 3' -55.1 NC_006938.1 + 14613 0.67 0.736518
Target:  5'- gCCAGAUGgcUGGCUGcCGACGgucgGGAACc- -3'
miRNA:   3'- -GGUCUGC--ACCGGCaGCUGC----UCUUGca -5'
31775 3' -55.1 NC_006938.1 + 44022 0.67 0.76673
Target:  5'- aUCGGuC-UGGCC-UCGGCGGGAAUGg -3'
miRNA:   3'- -GGUCuGcACCGGcAGCUGCUCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 4830 0.67 0.76673
Target:  5'- aCCuGGCaccGGCCGaggaguUCGGCGAGGugGUc -3'
miRNA:   3'- -GGuCUGca-CCGGC------AGCUGCUCUugCA- -5'
31775 3' -55.1 NC_006938.1 + 49474 0.66 0.786234
Target:  5'- uCCAGuCGgccGCCGUCGACGAcacCGUc -3'
miRNA:   3'- -GGUCuGCac-CGGCAGCUGCUcuuGCA- -5'
31775 3' -55.1 NC_006938.1 + 18132 0.66 0.786234
Target:  5'- aCCGG-UGUGGCgGUgGGaccCGAGGACGc -3'
miRNA:   3'- -GGUCuGCACCGgCAgCU---GCUCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 22277 0.66 0.795763
Target:  5'- gCCu-GCcaGGCCGUCGcCGGGAGCGc -3'
miRNA:   3'- -GGucUGcaCCGGCAGCuGCUCUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.