miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31775 3' -55.1 NC_006938.1 + 37540 0.69 0.641632
Target:  5'- gCUGGACGaGGCCGccaUCGAgGAGAuCGUc -3'
miRNA:   3'- -GGUCUGCaCCGGC---AGCUgCUCUuGCA- -5'
31775 3' -55.1 NC_006938.1 + 23583 0.76 0.267191
Target:  5'- gCCAGACGUGaaGCCGUgGGCGAcGGAgGUg -3'
miRNA:   3'- -GGUCUGCAC--CGGCAgCUGCU-CUUgCA- -5'
31775 3' -55.1 NC_006938.1 + 9678 0.72 0.436225
Target:  5'- --cGACgGUGGCgGUUGGCGAGAACu- -3'
miRNA:   3'- gguCUG-CACCGgCAGCUGCUCUUGca -5'
31775 3' -55.1 NC_006938.1 + 61296 0.72 0.455277
Target:  5'- --cGugGUGGCCGcgCGACcGGAACGa -3'
miRNA:   3'- gguCugCACCGGCa-GCUGcUCUUGCa -5'
31775 3' -55.1 NC_006938.1 + 5360 0.72 0.46497
Target:  5'- cCCAGACGuUGGUCGUgggagaccCGACGAGcgccACGUu -3'
miRNA:   3'- -GGUCUGC-ACCGGCA--------GCUGCUCu---UGCA- -5'
31775 3' -55.1 NC_006938.1 + 12093 0.7 0.577535
Target:  5'- cCCcGGCuccGGCCG-CGACGAGGAUGUc -3'
miRNA:   3'- -GGuCUGca-CCGGCaGCUGCUCUUGCA- -5'
31775 3' -55.1 NC_006938.1 + 27036 0.7 0.588158
Target:  5'- --cGACG-GGCCagGUCGGCGAGAGgGa -3'
miRNA:   3'- gguCUGCaCCGG--CAGCUGCUCUUgCa -5'
31775 3' -55.1 NC_006938.1 + 5244 0.69 0.620205
Target:  5'- cUCGGagaccGCGUGGCUGUUGACGA--ACGg -3'
miRNA:   3'- -GGUC-----UGCACCGGCAGCUGCUcuUGCa -5'
31775 3' -55.1 NC_006938.1 + 21141 0.69 0.620205
Target:  5'- gCAGGCGUcgcuccGGCCGcgUCGGCGaAGAACu- -3'
miRNA:   3'- gGUCUGCA------CCGGC--AGCUGC-UCUUGca -5'
31775 3' -55.1 NC_006938.1 + 58627 0.68 0.684312
Target:  5'- --uGAUGUGGUCGUCGuCgGAGAACu- -3'
miRNA:   3'- gguCUGCACCGGCAGCuG-CUCUUGca -5'
31775 3' -55.1 NC_006938.1 + 15163 0.67 0.736518
Target:  5'- gUAGGcCGUGGCCGccucgaUCGugGAGAcagugccgACGg -3'
miRNA:   3'- gGUCU-GCACCGGC------AGCugCUCU--------UGCa -5'
31775 3' -55.1 NC_006938.1 + 5760 1.1 0.001339
Target:  5'- aCCAGACGUGGCCGUCGACGAGAACGUg -3'
miRNA:   3'- -GGUCUGCACCGGCAGCUGCUCUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.