miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31776 3' -54.6 NC_006938.1 + 39138 0.66 0.799199
Target:  5'- gGUCCcgaccgaggUGGAAcGCCAGGCGU-CCGcAGg -3'
miRNA:   3'- gCAGG---------ACCUU-CGGUCUGUAcGGCaUC- -5'
31776 3' -54.6 NC_006938.1 + 25709 0.66 0.779628
Target:  5'- -cUCCUGG-AGCCAGAgGucaggggugaUGCCGg-- -3'
miRNA:   3'- gcAGGACCuUCGGUCUgU----------ACGGCauc -5'
31776 3' -54.6 NC_006938.1 + 53550 0.66 0.779628
Target:  5'- uCGUCCcugUGGGAGCgauGGACGUGagGUGGg -3'
miRNA:   3'- -GCAGG---ACCUUCGg--UCUGUACggCAUC- -5'
31776 3' -54.6 NC_006938.1 + 17657 0.66 0.779628
Target:  5'- aCGaCCUGGAcugggccugGGCCGagggcaucGACAUGCCGc-- -3'
miRNA:   3'- -GCaGGACCU---------UCGGU--------CUGUACGGCauc -5'
31776 3' -54.6 NC_006938.1 + 37008 0.66 0.759449
Target:  5'- uGUCCgaggucagGGAcAGCCGGACcgGCgCGcGGg -3'
miRNA:   3'- gCAGGa-------CCU-UCGGUCUGuaCG-GCaUC- -5'
31776 3' -54.6 NC_006938.1 + 44561 0.67 0.749159
Target:  5'- --cCCUGGAugAGCCGGuucaGUGCCuuGUGGg -3'
miRNA:   3'- gcaGGACCU--UCGGUCug--UACGG--CAUC- -5'
31776 3' -54.6 NC_006938.1 + 24765 0.67 0.749159
Target:  5'- cCGUCCacgaaGGAcgcGCCAGugAUGUCGUu- -3'
miRNA:   3'- -GCAGGa----CCUu--CGGUCugUACGGCAuc -5'
31776 3' -54.6 NC_006938.1 + 23217 0.67 0.738752
Target:  5'- cCGUCCUGGGu-CCAGugGUcGUCGUu- -3'
miRNA:   3'- -GCAGGACCUucGGUCugUA-CGGCAuc -5'
31776 3' -54.6 NC_006938.1 + 33770 0.67 0.724004
Target:  5'- gGUCCgGGcuggccccucggccGAGCCGGAuggcugcCAUGUCGUAGc -3'
miRNA:   3'- gCAGGaCC--------------UUCGGUCU-------GUACGGCAUC- -5'
31776 3' -54.6 NC_006938.1 + 31868 0.67 0.717627
Target:  5'- uGUCCUGG-AGCCGGuCGUGgCa--- -3'
miRNA:   3'- gCAGGACCuUCGGUCuGUACgGcauc -5'
31776 3' -54.6 NC_006938.1 + 14257 0.68 0.685337
Target:  5'- aCGUCCUGcucgaacGAGCCGGuCAUGCUGc-- -3'
miRNA:   3'- -GCAGGACc------UUCGGUCuGUACGGCauc -5'
31776 3' -54.6 NC_006938.1 + 23575 0.68 0.65259
Target:  5'- gGUCCauc--GCCAGACGUgaaGCCGUGGg -3'
miRNA:   3'- gCAGGaccuuCGGUCUGUA---CGGCAUC- -5'
31776 3' -54.6 NC_006938.1 + 55732 0.69 0.630648
Target:  5'- uGUCCUucGggGCUGGACcgGCCGa-- -3'
miRNA:   3'- gCAGGAc-CuuCGGUCUGuaCGGCauc -5'
31776 3' -54.6 NC_006938.1 + 10791 0.69 0.630648
Target:  5'- aGUCCUugaaccGGAAGCCAcGCGcccUGCCGUu- -3'
miRNA:   3'- gCAGGA------CCUUCGGUcUGU---ACGGCAuc -5'
31776 3' -54.6 NC_006938.1 + 14682 0.69 0.60871
Target:  5'- gCGUCC-GGGAGCCAGAagaacUCGUGGa -3'
miRNA:   3'- -GCAGGaCCUUCGGUCUguac-GGCAUC- -5'
31776 3' -54.6 NC_006938.1 + 40522 0.69 0.596673
Target:  5'- uGUCCUugacguaGGAGuGCCAGACGUGCUc--- -3'
miRNA:   3'- gCAGGA-------CCUU-CGGUCUGUACGGcauc -5'
31776 3' -54.6 NC_006938.1 + 44966 0.69 0.575976
Target:  5'- cCG-CCUcGGAcgcGCCGGGCAUGCCGc-- -3'
miRNA:   3'- -GCaGGA-CCUu--CGGUCUGUACGGCauc -5'
31776 3' -54.6 NC_006938.1 + 260 0.69 0.575976
Target:  5'- uCGUCUUGGAGGCaccGCGUGCCa--- -3'
miRNA:   3'- -GCAGGACCUUCGgucUGUACGGcauc -5'
31776 3' -54.6 NC_006938.1 + 56237 0.7 0.554369
Target:  5'- uCGUCCgGGAugaAGCCAGACAaugGCgGUc- -3'
miRNA:   3'- -GCAGGaCCU---UCGGUCUGUa--CGgCAuc -5'
31776 3' -54.6 NC_006938.1 + 23754 0.71 0.511947
Target:  5'- cCGUCCcGGAgGGUCAGACGgaggGCCGg-- -3'
miRNA:   3'- -GCAGGaCCU-UCGGUCUGUa---CGGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.