Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31776 | 3' | -54.6 | NC_006938.1 | + | 260 | 0.69 | 0.575976 |
Target: 5'- uCGUCUUGGAGGCaccGCGUGCCa--- -3' miRNA: 3'- -GCAGGACCUUCGgucUGUACGGcauc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 1313 | 0.72 | 0.422124 |
Target: 5'- gGUUCUGGAGGCguGGCAUcGCCuUGGc -3' miRNA: 3'- gCAGGACCUUCGguCUGUA-CGGcAUC- -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 5614 | 1.09 | 0.001446 |
Target: 5'- cCGUCCUGGAAGCCAGACAUGCCGUAGu -3' miRNA: 3'- -GCAGGACCUUCGGUCUGUACGGCAUC- -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 10791 | 0.69 | 0.630648 |
Target: 5'- aGUCCUugaaccGGAAGCCAcGCGcccUGCCGUu- -3' miRNA: 3'- gCAGGA------CCUUCGGUcUGU---ACGGCAuc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 14257 | 0.68 | 0.685337 |
Target: 5'- aCGUCCUGcucgaacGAGCCGGuCAUGCUGc-- -3' miRNA: 3'- -GCAGGACc------UUCGGUCuGUACGGCauc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 14682 | 0.69 | 0.60871 |
Target: 5'- gCGUCC-GGGAGCCAGAagaacUCGUGGa -3' miRNA: 3'- -GCAGGaCCUUCGGUCUguac-GGCAUC- -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 15857 | 0.77 | 0.223106 |
Target: 5'- -uUCCUGGAcgAGCCGGG--UGCCGUGGg -3' miRNA: 3'- gcAGGACCU--UCGGUCUguACGGCAUC- -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 17657 | 0.66 | 0.779628 |
Target: 5'- aCGaCCUGGAcugggccugGGCCGagggcaucGACAUGCCGc-- -3' miRNA: 3'- -GCaGGACCU---------UCGGU--------CUGUACGGCauc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 23217 | 0.67 | 0.738752 |
Target: 5'- cCGUCCUGGGu-CCAGugGUcGUCGUu- -3' miRNA: 3'- -GCAGGACCUucGGUCugUA-CGGCAuc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 23575 | 0.68 | 0.65259 |
Target: 5'- gGUCCauc--GCCAGACGUgaaGCCGUGGg -3' miRNA: 3'- gCAGGaccuuCGGUCUGUA---CGGCAUC- -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 23754 | 0.71 | 0.511947 |
Target: 5'- cCGUCCcGGAgGGUCAGACGgaggGCCGg-- -3' miRNA: 3'- -GCAGGaCCU-UCGGUCUGUa---CGGCauc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 24765 | 0.67 | 0.749159 |
Target: 5'- cCGUCCacgaaGGAcgcGCCAGugAUGUCGUu- -3' miRNA: 3'- -GCAGGa----CCUu--CGGUCugUACGGCAuc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 25709 | 0.66 | 0.779628 |
Target: 5'- -cUCCUGG-AGCCAGAgGucaggggugaUGCCGg-- -3' miRNA: 3'- gcAGGACCuUCGGUCUgU----------ACGGCauc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 30554 | 0.76 | 0.274223 |
Target: 5'- uGUCCUGGAAGUCAGA---GCCGUc- -3' miRNA: 3'- gCAGGACCUUCGGUCUguaCGGCAuc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 31868 | 0.67 | 0.717627 |
Target: 5'- uGUCCUGG-AGCCGGuCGUGgCa--- -3' miRNA: 3'- gCAGGACCuUCGGUCuGUACgGcauc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 33770 | 0.67 | 0.724004 |
Target: 5'- gGUCCgGGcuggccccucggccGAGCCGGAuggcugcCAUGUCGUAGc -3' miRNA: 3'- gCAGGaCC--------------UUCGGUCU-------GUACGGCAUC- -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 37008 | 0.66 | 0.759449 |
Target: 5'- uGUCCgaggucagGGAcAGCCGGACcgGCgCGcGGg -3' miRNA: 3'- gCAGGa-------CCU-UCGGUCUGuaCG-GCaUC- -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 39138 | 0.66 | 0.799199 |
Target: 5'- gGUCCcgaccgaggUGGAAcGCCAGGCGU-CCGcAGg -3' miRNA: 3'- gCAGG---------ACCUU-CGGUCUGUAcGGCaUC- -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 40522 | 0.69 | 0.596673 |
Target: 5'- uGUCCUugacguaGGAGuGCCAGACGUGCUc--- -3' miRNA: 3'- gCAGGA-------CCUU-CGGUCUGUACGGcauc -5' |
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31776 | 3' | -54.6 | NC_006938.1 | + | 44561 | 0.67 | 0.749159 |
Target: 5'- --cCCUGGAugAGCCGGuucaGUGCCuuGUGGg -3' miRNA: 3'- gcaGGACCU--UCGGUCug--UACGG--CAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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