miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31777 5' -54.7 NC_006938.1 + 6097 0.66 0.766118
Target:  5'- aGGAagAGACGGC-C-CUGGCCgagGCAUGGg -3'
miRNA:   3'- -UCU--UCUGUCGaGcGGCUGGa--CGUACU- -5'
31777 5' -54.7 NC_006938.1 + 53629 0.66 0.766118
Target:  5'- aAGcGGAguGuCggGCCGACCUGgGUGAc -3'
miRNA:   3'- -UCuUCUguC-GagCGGCUGGACgUACU- -5'
31777 5' -54.7 NC_006938.1 + 9147 0.66 0.765097
Target:  5'- cGAGGACAGUgguggccUCGacuCCGGCCgcgacaggugGCGUGAa -3'
miRNA:   3'- uCUUCUGUCG-------AGC---GGCUGGa---------CGUACU- -5'
31777 5' -54.7 NC_006938.1 + 21497 0.66 0.765097
Target:  5'- aGGAuGGCAGCgccgaaggcaccgUCGUugaucgaGACCUGCGUGGu -3'
miRNA:   3'- -UCUuCUGUCG-------------AGCGg------CUGGACGUACU- -5'
31777 5' -54.7 NC_006938.1 + 23676 0.67 0.724341
Target:  5'- cGAAG-CAGCgcgaCGUCGGCCagggcgGCAUGGc -3'
miRNA:   3'- uCUUCuGUCGa---GCGGCUGGa-----CGUACU- -5'
31777 5' -54.7 NC_006938.1 + 52191 0.67 0.724341
Target:  5'- uGGAGGCGGUgguggcaucuUCGgCGGCCUGUuugGUGGa -3'
miRNA:   3'- uCUUCUGUCG----------AGCgGCUGGACG---UACU- -5'
31777 5' -54.7 NC_006938.1 + 12552 0.67 0.702852
Target:  5'- cGguGGCAGCgucgaacgCGCCGacuGCCUGCAgGAc -3'
miRNA:   3'- uCuuCUGUCGa-------GCGGC---UGGACGUaCU- -5'
31777 5' -54.7 NC_006938.1 + 62105 0.67 0.702852
Target:  5'- cGGGAGGCAGCUC-CUucuCCUGCgGUGGc -3'
miRNA:   3'- -UCUUCUGUCGAGcGGcu-GGACG-UACU- -5'
31777 5' -54.7 NC_006938.1 + 47848 0.67 0.702852
Target:  5'- --cAGGCGGCUCGCucccCGuCCUGCAg-- -3'
miRNA:   3'- ucuUCUGUCGAGCG----GCuGGACGUacu -5'
31777 5' -54.7 NC_006938.1 + 9203 0.67 0.681085
Target:  5'- uAGAGGGC--CUCGCCGACCaGUAUc- -3'
miRNA:   3'- -UCUUCUGucGAGCGGCUGGaCGUAcu -5'
31777 5' -54.7 NC_006938.1 + 95 0.69 0.603983
Target:  5'- uGggGACguucAGCUCGCgagCGGCCUGCu--- -3'
miRNA:   3'- uCuuCUG----UCGAGCG---GCUGGACGuacu -5'
31777 5' -54.7 NC_006938.1 + 19142 0.69 0.582027
Target:  5'- gAGAAGAUcGCcgagaucaUGCgGACCUGCGUGGa -3'
miRNA:   3'- -UCUUCUGuCGa-------GCGgCUGGACGUACU- -5'
31777 5' -54.7 NC_006938.1 + 39146 0.69 0.582027
Target:  5'- -uGAGACGGUagaggaugUCGCCGACCcugGuCAUGAc -3'
miRNA:   3'- ucUUCUGUCG--------AGCGGCUGGa--C-GUACU- -5'
31777 5' -54.7 NC_006938.1 + 41396 0.7 0.549426
Target:  5'- ---cGACgGGCUCGUCGGCCUGUgggucGUGGa -3'
miRNA:   3'- ucuuCUG-UCGAGCGGCUGGACG-----UACU- -5'
31777 5' -54.7 NC_006938.1 + 4576 0.7 0.516359
Target:  5'- -uGAGGCAGCgCGCuggagcuCGGCCUGUGUGAc -3'
miRNA:   3'- ucUUCUGUCGaGCG-------GCUGGACGUACU- -5'
31777 5' -54.7 NC_006938.1 + 60267 0.71 0.445976
Target:  5'- cAGAAGAUGGCUCGCCagGGCUUGUcccaGUGc -3'
miRNA:   3'- -UCUUCUGUCGAGCGG--CUGGACG----UACu -5'
31777 5' -54.7 NC_006938.1 + 61433 0.74 0.321563
Target:  5'- cAGuuGACGGCU-GCC-ACCUGCGUGAc -3'
miRNA:   3'- -UCuuCUGUCGAgCGGcUGGACGUACU- -5'
31777 5' -54.7 NC_006938.1 + 55622 0.74 0.306056
Target:  5'- gAGAGGAgGuCUUGaCCGACCUGCAUGu -3'
miRNA:   3'- -UCUUCUgUcGAGC-GGCUGGACGUACu -5'
31777 5' -54.7 NC_006938.1 + 4336 0.75 0.276776
Target:  5'- uGGAGACcgcGCUCGCCGAgCUGCGa-- -3'
miRNA:   3'- uCUUCUGu--CGAGCGGCUgGACGUacu -5'
31777 5' -54.7 NC_006938.1 + 2473 0.86 0.053668
Target:  5'- uGggGACAGcCUCGUCGAUCUGCGUGGc -3'
miRNA:   3'- uCuuCUGUC-GAGCGGCUGGACGUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.