miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31779 3' -51.9 NC_006938.1 + 30561 0.66 0.910903
Target:  5'- uGGGCGAuGUCG-UCaUCGUCaACAAGa -3'
miRNA:   3'- gCCCGUUuCAGUgAG-AGCAGgUGUUC- -5'
31779 3' -51.9 NC_006938.1 + 57128 0.66 0.910249
Target:  5'- aGGGCAucGcUCucaGCUCcaucguggaggacUUGUCCACGAGa -3'
miRNA:   3'- gCCCGUuuC-AG---UGAG-------------AGCAGGUGUUC- -5'
31779 3' -51.9 NC_006938.1 + 19361 0.66 0.890076
Target:  5'- aGGGCAAGGUguUcCUCuUCCAgAAGa -3'
miRNA:   3'- gCCCGUUUCAguGaGAGcAGGUgUUC- -5'
31779 3' -51.9 NC_006938.1 + 45653 0.67 0.87484
Target:  5'- gGGGCAGGG-CGCagUCGUCCuCGc- -3'
miRNA:   3'- gCCCGUUUCaGUGagAGCAGGuGUuc -5'
31779 3' -51.9 NC_006938.1 + 50763 0.67 0.87484
Target:  5'- gGGGCAcugcgcggcgacGAGcucCGCUC-CGUCCugGAGc -3'
miRNA:   3'- gCCCGU------------UUCa--GUGAGaGCAGGugUUC- -5'
31779 3' -51.9 NC_006938.1 + 17015 0.67 0.866833
Target:  5'- aGGGCuucguGGAGUCACUCgcggucgUGUCCAg--- -3'
miRNA:   3'- gCCCG-----UUUCAGUGAGa------GCAGGUguuc -5'
31779 3' -51.9 NC_006938.1 + 53215 0.68 0.832382
Target:  5'- aGGGaGAGGUCACaaccCUCG-CCACAAu -3'
miRNA:   3'- gCCCgUUUCAGUGa---GAGCaGGUGUUc -5'
31779 3' -51.9 NC_006938.1 + 28997 0.68 0.820413
Target:  5'- cCGGGCAu--UCGCUCcgacccuggccugcUCGUCCuGCAGGu -3'
miRNA:   3'- -GCCCGUuucAGUGAG--------------AGCAGG-UGUUC- -5'
31779 3' -51.9 NC_006938.1 + 27334 0.68 0.813824
Target:  5'- aCGGGCGAG---ACgCUgGUCCGCGAGa -3'
miRNA:   3'- -GCCCGUUUcagUGaGAgCAGGUGUUC- -5'
31779 3' -51.9 NC_006938.1 + 42807 0.68 0.813824
Target:  5'- gGGcGCGAAGuUCAC-CUUGUCCGCc-- -3'
miRNA:   3'- gCC-CGUUUC-AGUGaGAGCAGGUGuuc -5'
31779 3' -51.9 NC_006938.1 + 16022 0.68 0.813824
Target:  5'- uGGGCuuGGUUcg-CUUGUUCGCAAGg -3'
miRNA:   3'- gCCCGuuUCAGugaGAGCAGGUGUUC- -5'
31779 3' -51.9 NC_006938.1 + 25818 0.71 0.663802
Target:  5'- aGGGCAucGUCguggGCcucggggaugaccuUCUUGUCCACGAGc -3'
miRNA:   3'- gCCCGUuuCAG----UG--------------AGAGCAGGUGUUC- -5'
31779 3' -51.9 NC_006938.1 + 58868 0.71 0.633752
Target:  5'- aGGGacuuGAcUCGCUCUCGUCCACc-- -3'
miRNA:   3'- gCCCgu--UUcAGUGAGAGCAGGUGuuc -5'
31779 3' -51.9 NC_006938.1 + 48862 0.72 0.622608
Target:  5'- uGGGCA----CACccugCUCGUCCACGAGu -3'
miRNA:   3'- gCCCGUuucaGUGa---GAGCAGGUGUUC- -5'
31779 3' -51.9 NC_006938.1 + 2111 0.73 0.545369
Target:  5'- cCGGaCAGGGUCACUCcUGUCaCGCAGGu -3'
miRNA:   3'- -GCCcGUUUCAGUGAGaGCAG-GUGUUC- -5'
31779 3' -51.9 NC_006938.1 + 1923 1.1 0.002417
Target:  5'- uCGGGCAAAGUCACUCUCGUCCACAAGa -3'
miRNA:   3'- -GCCCGUUUCAGUGAGAGCAGGUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.