miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31780 5' -59.2 NC_006938.1 + 57672 0.74 0.169845
Target:  5'- cUCCACCuUGCGC-UCGAacAGUCCGGGGa -3'
miRNA:   3'- -AGGUGG-ACGCGcAGCU--UCGGGUCCUc -5'
31780 5' -59.2 NC_006938.1 + 57273 0.67 0.495161
Target:  5'- gCCGCUcGCGCaGgcauucuucuUCGAGGCCguGGAGu -3'
miRNA:   3'- aGGUGGaCGCG-C----------AGCUUCGGguCCUC- -5'
31780 5' -59.2 NC_006938.1 + 54400 0.68 0.400665
Target:  5'- gCCACCUGuCGCGgcCGGAGUCgAGGc- -3'
miRNA:   3'- aGGUGGAC-GCGCa-GCUUCGGgUCCuc -5'
31780 5' -59.2 NC_006938.1 + 47089 0.67 0.495161
Target:  5'- cUCgAUgUGCGUGUU---GCCCAGGAGc -3'
miRNA:   3'- -AGgUGgACGCGCAGcuuCGGGUCCUC- -5'
31780 5' -59.2 NC_006938.1 + 46548 0.66 0.556456
Target:  5'- aCCGCgaGUGacuccaCGAAGCCCuGGAGa -3'
miRNA:   3'- aGGUGgaCGCgca---GCUUCGGGuCCUC- -5'
31780 5' -59.2 NC_006938.1 + 46444 0.68 0.408697
Target:  5'- aUCACCaGCGCGggagucacUCGAugacagcGGCCCAGGcAGa -3'
miRNA:   3'- aGGUGGaCGCGC--------AGCU-------UCGGGUCC-UC- -5'
31780 5' -59.2 NC_006938.1 + 45645 0.66 0.525471
Target:  5'- cCUACCUGaC-CGaUCGAGGC-CGGGAGg -3'
miRNA:   3'- aGGUGGAC-GcGC-AGCUUCGgGUCCUC- -5'
31780 5' -59.2 NC_006938.1 + 45284 0.69 0.38318
Target:  5'- cCCACUUGCG-GagGcGGCCCAGGGc -3'
miRNA:   3'- aGGUGGACGCgCagCuUCGGGUCCUc -5'
31780 5' -59.2 NC_006938.1 + 43488 0.66 0.556456
Target:  5'- -aCAUCUGUGUGguggCGGGuGCCCAGGcGa -3'
miRNA:   3'- agGUGGACGCGCa---GCUU-CGGGUCCuC- -5'
31780 5' -59.2 NC_006938.1 + 43426 0.72 0.248998
Target:  5'- -gCGCCUcgucccaGCGCugguuGUCgGAGGCCCAGGAGa -3'
miRNA:   3'- agGUGGA-------CGCG-----CAG-CUUCGGGUCCUC- -5'
31780 5' -59.2 NC_006938.1 + 41406 0.66 0.566906
Target:  5'- gUCgGCCUGUGgGUCGugGAGCUCGGa-- -3'
miRNA:   3'- -AGgUGGACGCgCAGC--UUCGGGUCcuc -5'
31780 5' -59.2 NC_006938.1 + 41019 0.67 0.495161
Target:  5'- -gCACCuugucgcggaggUGgGCGUUGAAguuGCCCAGGAa -3'
miRNA:   3'- agGUGG------------ACgCGCAGCUU---CGGGUCCUc -5'
31780 5' -59.2 NC_006938.1 + 39661 0.74 0.183726
Target:  5'- gUCCGCCcGCGCGUCGAucacGCCCuuGAa -3'
miRNA:   3'- -AGGUGGaCGCGCAGCUu---CGGGucCUc -5'
31780 5' -59.2 NC_006938.1 + 37581 0.66 0.515285
Target:  5'- -aCACC-GUGuCGUUGuGGGCCCAGGAc -3'
miRNA:   3'- agGUGGaCGC-GCAGC-UUCGGGUCCUc -5'
31780 5' -59.2 NC_006938.1 + 34750 0.7 0.326098
Target:  5'- cUgACCgUGCGCGUCGcGGCCCGGa-- -3'
miRNA:   3'- aGgUGG-ACGCGCAGCuUCGGGUCcuc -5'
31780 5' -59.2 NC_006938.1 + 33435 0.68 0.437116
Target:  5'- gUCCAaCUGCccGCG-CGAAcGCCCAGGcAGa -3'
miRNA:   3'- -AGGUgGACG--CGCaGCUU-CGGGUCC-UC- -5'
31780 5' -59.2 NC_006938.1 + 32916 0.67 0.495161
Target:  5'- gCCACCUGagccaGgGUCGcGGCUCGGGc- -3'
miRNA:   3'- aGGUGGACg----CgCAGCuUCGGGUCCuc -5'
31780 5' -59.2 NC_006938.1 + 26412 0.73 0.20909
Target:  5'- aUCCACgUGCGCaUCGAGGUgaAGGAGu -3'
miRNA:   3'- -AGGUGgACGCGcAGCUUCGggUCCUC- -5'
31780 5' -59.2 NC_006938.1 + 15367 0.7 0.318477
Target:  5'- --gACCUGCGUGUUGucGCCCguGGGAu -3'
miRNA:   3'- aggUGGACGCGCAGCuuCGGG--UCCUc -5'
31780 5' -59.2 NC_006938.1 + 15124 0.69 0.373782
Target:  5'- cUCCGCCaucuugaUGCGgGU-GAAGUCCgAGGAGg -3'
miRNA:   3'- -AGGUGG-------ACGCgCAgCUUCGGG-UCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.