Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31781 | 3' | -59 | NC_006938.1 | + | 32941 | 0.66 | 0.593142 |
Target: 5'- cGUGgaaGCUCGACCGCuCGuUCGAC-UGGGg -3' miRNA: 3'- cCAC---CGAGCUGGUG-GC-AGCUGcGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 34588 | 0.68 | 0.491798 |
Target: 5'- --cGGCUCGACCuGCCGaCGgACGCcGAc -3' miRNA: 3'- ccaCCGAGCUGG-UGGCaGC-UGCGcCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 35854 | 0.68 | 0.472436 |
Target: 5'- gGGUGGUcacgaUCGACUGCagcagGUCGGCGgcCGGAa -3' miRNA: 3'- -CCACCG-----AGCUGGUGg----CAGCUGC--GCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 38410 | 0.73 | 0.256914 |
Target: 5'- cGGUGGCggccUGACCuucaacgucCCGUCGugGCGcGAc -3' miRNA: 3'- -CCACCGa---GCUGGu--------GGCAGCugCGC-CU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 39543 | 0.71 | 0.325995 |
Target: 5'- cGGUGGCaCGGCCACCGcUCGcACGgucuCGGc -3' miRNA: 3'- -CCACCGaGCUGGUGGC-AGC-UGC----GCCu -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 40943 | 0.67 | 0.551875 |
Target: 5'- --cGGCUCGACCcgccCCG-CGAUG-GGAa -3' miRNA: 3'- ccaCCGAGCUGGu---GGCaGCUGCgCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 42695 | 0.67 | 0.545754 |
Target: 5'- aGGUGGaggggUCGAcaCCACUGUCGAgaccgcgaauagcaGCGGAu -3' miRNA: 3'- -CCACCg----AGCU--GGUGGCAGCUg-------------CGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 47071 | 0.66 | 0.588987 |
Target: 5'- uGUGGCgcacggugacgcgCGcCCACuCGUCGGCggucgGCGGAg -3' miRNA: 3'- cCACCGa------------GCuGGUG-GCAGCUG-----CGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 47213 | 0.67 | 0.531558 |
Target: 5'- aGUGGUUCcaGAaCAaCGUCGugGCGGAc -3' miRNA: 3'- cCACCGAG--CUgGUgGCAGCugCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 47957 | 0.67 | 0.551875 |
Target: 5'- uGGUcGGgUCGGCCGUgGUCGACuGCaGGAc -3' miRNA: 3'- -CCA-CCgAGCUGGUGgCAGCUG-CG-CCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 48485 | 0.67 | 0.541685 |
Target: 5'- --aGGCcgUGGCCGCC-UCGAuCGUGGAg -3' miRNA: 3'- ccaCCGa-GCUGGUGGcAGCU-GCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 49466 | 0.69 | 0.407943 |
Target: 5'- --cGGCaagauccagUCGGCCGCCGUCGACGaCa-- -3' miRNA: 3'- ccaCCG---------AGCUGGUGGCAGCUGC-Gccu -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 51270 | 0.68 | 0.491798 |
Target: 5'- gGGuUGGCggCGAUggcaGCCGUCagcGCGCGGAa -3' miRNA: 3'- -CC-ACCGa-GCUGg---UGGCAGc--UGCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 51942 | 0.66 | 0.586911 |
Target: 5'- cGGUgGGCUCGGCgguGCCGcCcgaucugccgcgaagGACGUGGAg -3' miRNA: 3'- -CCA-CCGAGCUGg--UGGCaG---------------CUGCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 52200 | 0.69 | 0.444139 |
Target: 5'- uGGUGGCaucuUCGGCgGCCuguuugGUgGAgGCGGAg -3' miRNA: 3'- -CCACCG----AGCUGgUGG------CAgCUgCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 52883 | 0.66 | 0.572421 |
Target: 5'- --gGGCUCGACC-UCuUCGAC-CGGAu -3' miRNA: 3'- ccaCCGAGCUGGuGGcAGCUGcGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 53441 | 0.67 | 0.566236 |
Target: 5'- cGGUGGCaaguUCGACUucGCCGagauccgcauuggcaUCGucaacuACGCGGAc -3' miRNA: 3'- -CCACCG----AGCUGG--UGGC---------------AGC------UGCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 54494 | 0.68 | 0.462901 |
Target: 5'- uGGUGGcCUCGACUccgGCCG-CGACagGUGGc -3' miRNA: 3'- -CCACC-GAGCUGG---UGGCaGCUG--CGCCu -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 57735 | 0.7 | 0.357251 |
Target: 5'- uGUGaGCUCcAUCACgGUCGGgGCGGAc -3' miRNA: 3'- cCAC-CGAGcUGGUGgCAGCUgCGCCU- -5' |
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31781 | 3' | -59 | NC_006938.1 | + | 57920 | 0.69 | 0.413254 |
Target: 5'- cGGUGGCUUcuggggaaagcccaGGCCaccaccagacgugGCCGUCGACGagaacgugaCGGAg -3' miRNA: 3'- -CCACCGAG--------------CUGG-------------UGGCAGCUGC---------GCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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