miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31781 3' -59 NC_006938.1 + 24 1.11 0.000497
Target:  5'- cGGUGGCUCGACCACCGUCGACGCGGAg -3'
miRNA:   3'- -CCACCGAGCUGGUGGCAGCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 1548 0.7 0.39055
Target:  5'- uGGgacucGCUCGucacguacgccaACCACC-UCGGCGCGGAg -3'
miRNA:   3'- -CCac---CGAGC------------UGGUGGcAGCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 2756 0.71 0.35243
Target:  5'- cGGUGGUUCcccggcuuccguucgGACCcUCGUCGcCGUGGAg -3'
miRNA:   3'- -CCACCGAG---------------CUGGuGGCAGCuGCGCCU- -5'
31781 3' -59 NC_006938.1 + 3500 0.69 0.407943
Target:  5'- aGUGGCaCGACCAga-UCGACGCGGc -3'
miRNA:   3'- cCACCGaGCUGGUggcAGCUGCGCCu -5'
31781 3' -59 NC_006938.1 + 7254 0.7 0.39055
Target:  5'- uGUGaGCUCGGCCauucGCCGUCuccaGCGGGa -3'
miRNA:   3'- cCAC-CGAGCUGG----UGGCAGcug-CGCCU- -5'
31781 3' -59 NC_006938.1 + 8606 0.66 0.610851
Target:  5'- aGGUGGCUcuacacggccaucaCGaggGCCGCCGaaagagUUGACGUGGu -3'
miRNA:   3'- -CCACCGA--------------GC---UGGUGGC------AGCUGCGCCu -5'
31781 3' -59 NC_006938.1 + 8696 0.66 0.572421
Target:  5'- uGGUGGCuuUCGACCACCuGUCaa---GGAa -3'
miRNA:   3'- -CCACCG--AGCUGGUGG-CAGcugcgCCU- -5'
31781 3' -59 NC_006938.1 + 9099 0.7 0.365386
Target:  5'- uGGUGGCggCGGCCugC-UUGGCGCGc- -3'
miRNA:   3'- -CCACCGa-GCUGGugGcAGCUGCGCcu -5'
31781 3' -59 NC_006938.1 + 9174 0.66 0.624428
Target:  5'- ---aGCUCuGGCCACCGcCGugGCGc- -3'
miRNA:   3'- ccacCGAG-CUGGUGGCaGCugCGCcu -5'
31781 3' -59 NC_006938.1 + 10771 0.68 0.466703
Target:  5'- cGGUGGCgaggauugccccUCGACCaccuuGCCGuccuccgucacauacUCGGCGgGGAc -3'
miRNA:   3'- -CCACCG------------AGCUGG-----UGGC---------------AGCUGCgCCU- -5'
31781 3' -59 NC_006938.1 + 15468 0.66 0.613983
Target:  5'- -cUGGcCUCGACCAggagCGggcUGACGCGGGc -3'
miRNA:   3'- ccACC-GAGCUGGUg---GCa--GCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 15829 0.68 0.453467
Target:  5'- -cUGGCgCGACC-CCG--GACGCGGAc -3'
miRNA:   3'- ccACCGaGCUGGuGGCagCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 16129 0.68 0.490821
Target:  5'- cGGcUGGgUCGACCGCUGcCacacccuccucaaGACGCGGc -3'
miRNA:   3'- -CC-ACCgAGCUGGUGGCaG-------------CUGCGCCu -5'
31781 3' -59 NC_006938.1 + 17765 0.66 0.603551
Target:  5'- ---cGCUCGACU-CCGUCGcCGgGGAc -3'
miRNA:   3'- ccacCGAGCUGGuGGCAGCuGCgCCU- -5'
31781 3' -59 NC_006938.1 + 19906 0.71 0.323734
Target:  5'- cGUGGUUggcaugggauacaaCGGCUuccCCGUCGGCGUGGAg -3'
miRNA:   3'- cCACCGA--------------GCUGGu--GGCAGCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 20723 0.67 0.530549
Target:  5'- uGG-GGCUCGACCggaggcaggugucGCUGaUgGAgGCGGAc -3'
miRNA:   3'- -CCaCCGAGCUGG-------------UGGC-AgCUgCGCCU- -5'
31781 3' -59 NC_006938.1 + 21263 0.66 0.603551
Target:  5'- ---cGC-CGACCcgucGCUGuUCGACGCGGAg -3'
miRNA:   3'- ccacCGaGCUGG----UGGC-AGCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 24314 0.68 0.453467
Target:  5'- aGGU-GCUCGACgGCCGcaUCcuggagGACGUGGAg -3'
miRNA:   3'- -CCAcCGAGCUGgUGGC--AG------CUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 27279 0.66 0.624428
Target:  5'- cGGagGGUugagcaccuccUUGACCGCC-UCGACGUGGc -3'
miRNA:   3'- -CCa-CCG-----------AGCUGGUGGcAGCUGCGCCu -5'
31781 3' -59 NC_006938.1 + 28639 0.67 0.562123
Target:  5'- gGGU-GCUCGACCACgacaCGugGCuGGAg -3'
miRNA:   3'- -CCAcCGAGCUGGUGgca-GCugCG-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.