miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31782 3' -58.8 NC_006938.1 + 48090 0.66 0.563123
Target:  5'- aGCGUgaUGCCggaGGCGGCGAGGgaGuuGa -3'
miRNA:   3'- -CGUA--GCGGaa-CCGUCGUUCCggCggC- -5'
31782 3' -58.8 NC_006938.1 + 19820 0.66 0.552598
Target:  5'- cGCAcCGCgUcgGGCAGCGGuGGCUGguCCGg -3'
miRNA:   3'- -CGUaGCGgAa-CCGUCGUU-CCGGC--GGC- -5'
31782 3' -58.8 NC_006938.1 + 24870 0.66 0.531734
Target:  5'- aGCugCGCCaUGGCGGCGAucGCCGCg- -3'
miRNA:   3'- -CGuaGCGGaACCGUCGUUc-CGGCGgc -5'
31782 3' -58.8 NC_006938.1 + 41479 0.67 0.511163
Target:  5'- aCGUCGUCggGGacuuuGCccAGGCCGCCGc -3'
miRNA:   3'- cGUAGCGGaaCCgu---CGu-UCCGGCGGC- -5'
31782 3' -58.8 NC_006938.1 + 23688 0.67 0.511163
Target:  5'- aCGUCgGCCagGGCGGCAuGGCCGa-- -3'
miRNA:   3'- cGUAG-CGGaaCCGUCGUuCCGGCggc -5'
31782 3' -58.8 NC_006938.1 + 404 0.67 0.511163
Target:  5'- gGCgAUUGgCUUGGCAGCc--GUCGCCa -3'
miRNA:   3'- -CG-UAGCgGAACCGUCGuucCGGCGGc -5'
31782 3' -58.8 NC_006938.1 + 33815 0.67 0.501
Target:  5'- uGCAU-GCCggacgucggUGGCAGguAGacGCCGCCc -3'
miRNA:   3'- -CGUAgCGGa--------ACCGUCguUC--CGGCGGc -5'
31782 3' -58.8 NC_006938.1 + 11102 0.67 0.490928
Target:  5'- ---cCGCCUUGGCAG-GAGGCgagugguucuCGCCc -3'
miRNA:   3'- cguaGCGGAACCGUCgUUCCG----------GCGGc -5'
31782 3' -58.8 NC_006938.1 + 3519 0.67 0.490928
Target:  5'- cGCG--GCCUgguaccacGGCGGCAAGGCCGg-- -3'
miRNA:   3'- -CGUagCGGAa-------CCGUCGUUCCGGCggc -5'
31782 3' -58.8 NC_006938.1 + 43456 0.67 0.480951
Target:  5'- gGCAUCcaCCUcgaaguagGGCAguuGCAAGGCCGCg- -3'
miRNA:   3'- -CGUAGc-GGAa-------CCGU---CGUUCCGGCGgc -5'
31782 3' -58.8 NC_006938.1 + 39677 0.67 0.480951
Target:  5'- aGCGU-GCCagUGGCGGCGAcGUCGuCCGa -3'
miRNA:   3'- -CGUAgCGGa-ACCGUCGUUcCGGC-GGC- -5'
31782 3' -58.8 NC_006938.1 + 55409 0.67 0.480951
Target:  5'- cGCGcUCGCCgcaGGCGGCcuGGGCuucuCGCCc -3'
miRNA:   3'- -CGU-AGCGGaa-CCGUCGu-UCCG----GCGGc -5'
31782 3' -58.8 NC_006938.1 + 51478 0.67 0.471074
Target:  5'- cGCGgccggaGCCggGGCAGuCGAGGCgaucguCGCCGc -3'
miRNA:   3'- -CGUag----CGGaaCCGUC-GUUCCG------GCGGC- -5'
31782 3' -58.8 NC_006938.1 + 51981 0.67 0.470092
Target:  5'- uGCAgCGCCacUGGCGGCGAcagaguucugguuGGCCGUg- -3'
miRNA:   3'- -CGUaGCGGa-ACCGUCGUU-------------CCGGCGgc -5'
31782 3' -58.8 NC_006938.1 + 62599 0.68 0.432643
Target:  5'- uGUGUCGC---GGCgAGCGAGGUCGuCCGg -3'
miRNA:   3'- -CGUAGCGgaaCCG-UCGUUCCGGC-GGC- -5'
31782 3' -58.8 NC_006938.1 + 11508 0.68 0.414125
Target:  5'- --uUCGCga-GGCGcGCAAGGCgGCCGa -3'
miRNA:   3'- cguAGCGgaaCCGU-CGUUCCGgCGGC- -5'
31782 3' -58.8 NC_006938.1 + 28920 0.69 0.356623
Target:  5'- uGCAcgagCGCCggaaGGCGGagucaacaagaggcuCGAGGCCGCUGg -3'
miRNA:   3'- -CGUa---GCGGaa--CCGUC---------------GUUCCGGCGGC- -5'
31782 3' -58.8 NC_006938.1 + 51505 0.69 0.353323
Target:  5'- gGCAUUGUUggcagcGGCGGCGAuGGCCgGCCa -3'
miRNA:   3'- -CGUAGCGGaa----CCGUCGUU-CCGG-CGGc -5'
31782 3' -58.8 NC_006938.1 + 37527 0.7 0.345168
Target:  5'- ---cCGCCgcUGGCaAGCuggacGAGGCCGCCa -3'
miRNA:   3'- cguaGCGGa-ACCG-UCG-----UUCCGGCGGc -5'
31782 3' -58.8 NC_006938.1 + 38039 0.7 0.345168
Target:  5'- aGCA-CGCCgagcggaUGGC--CAAGGCCGCUGg -3'
miRNA:   3'- -CGUaGCGGa------ACCGucGUUCCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.