miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31782 3' -58.8 NC_006938.1 + 41479 0.67 0.511163
Target:  5'- aCGUCGUCggGGacuuuGCccAGGCCGCCGc -3'
miRNA:   3'- cGUAGCGGaaCCgu---CGu-UCCGGCGGC- -5'
31782 3' -58.8 NC_006938.1 + 43456 0.67 0.480951
Target:  5'- gGCAUCcaCCUcgaaguagGGCAguuGCAAGGCCGCg- -3'
miRNA:   3'- -CGUAGc-GGAa-------CCGU---CGUUCCGGCGgc -5'
31782 3' -58.8 NC_006938.1 + 48090 0.66 0.563123
Target:  5'- aGCGUgaUGCCggaGGCGGCGAGGgaGuuGa -3'
miRNA:   3'- -CGUA--GCGGaa-CCGUCGUUCCggCggC- -5'
31782 3' -58.8 NC_006938.1 + 51478 0.67 0.471074
Target:  5'- cGCGgccggaGCCggGGCAGuCGAGGCgaucguCGCCGc -3'
miRNA:   3'- -CGUag----CGGaaCCGUC-GUUCCG------GCGGC- -5'
31782 3' -58.8 NC_006938.1 + 51505 0.69 0.353323
Target:  5'- gGCAUUGUUggcagcGGCGGCGAuGGCCgGCCa -3'
miRNA:   3'- -CGUAGCGGaa----CCGUCGUU-CCGG-CGGc -5'
31782 3' -58.8 NC_006938.1 + 51981 0.67 0.470092
Target:  5'- uGCAgCGCCacUGGCGGCGAcagaguucugguuGGCCGUg- -3'
miRNA:   3'- -CGUaGCGGa-ACCGUCGUU-------------CCGGCGgc -5'
31782 3' -58.8 NC_006938.1 + 55409 0.67 0.480951
Target:  5'- cGCGcUCGCCgcaGGCGGCcuGGGCuucuCGCCc -3'
miRNA:   3'- -CGU-AGCGGaa-CCGUCGu-UCCG----GCGGc -5'
31782 3' -58.8 NC_006938.1 + 58159 0.75 0.157521
Target:  5'- gGCGUCGUCgUGGCAGgGAGGgCGuuGa -3'
miRNA:   3'- -CGUAGCGGaACCGUCgUUCCgGCggC- -5'
31782 3' -58.8 NC_006938.1 + 60431 0.7 0.306443
Target:  5'- -gGUUGCCUgcagaGGC-GCugAGGGCCGCCGc -3'
miRNA:   3'- cgUAGCGGAa----CCGuCG--UUCCGGCGGC- -5'
31782 3' -58.8 NC_006938.1 + 62599 0.68 0.432643
Target:  5'- uGUGUCGC---GGCgAGCGAGGUCGuCCGg -3'
miRNA:   3'- -CGUAGCGgaaCCG-UCGUUCCGGC-GGC- -5'
31782 3' -58.8 NC_006938.1 + 63446 0.72 0.257952
Target:  5'- -gAUCGCCaaGGCGGUGaagcAGGCCGCUc -3'
miRNA:   3'- cgUAGCGGaaCCGUCGU----UCCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.