Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31782 | 3' | -58.8 | NC_006938.1 | + | 39677 | 0.67 | 0.480951 |
Target: 5'- aGCGU-GCCagUGGCGGCGAcGUCGuCCGa -3' miRNA: 3'- -CGUAgCGGa-ACCGUCGUUcCGGC-GGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 43456 | 0.67 | 0.480951 |
Target: 5'- gGCAUCcaCCUcgaaguagGGCAguuGCAAGGCCGCg- -3' miRNA: 3'- -CGUAGc-GGAa-------CCGU---CGUUCCGGCGgc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 3519 | 0.67 | 0.490928 |
Target: 5'- cGCG--GCCUgguaccacGGCGGCAAGGCCGg-- -3' miRNA: 3'- -CGUagCGGAa-------CCGUCGUUCCGGCggc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 11102 | 0.67 | 0.490928 |
Target: 5'- ---cCGCCUUGGCAG-GAGGCgagugguucuCGCCc -3' miRNA: 3'- cguaGCGGAACCGUCgUUCCG----------GCGGc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 33815 | 0.67 | 0.501 |
Target: 5'- uGCAU-GCCggacgucggUGGCAGguAGacGCCGCCc -3' miRNA: 3'- -CGUAgCGGa--------ACCGUCguUC--CGGCGGc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 23688 | 0.67 | 0.511163 |
Target: 5'- aCGUCgGCCagGGCGGCAuGGCCGa-- -3' miRNA: 3'- cGUAG-CGGaaCCGUCGUuCCGGCggc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 41479 | 0.67 | 0.511163 |
Target: 5'- aCGUCGUCggGGacuuuGCccAGGCCGCCGc -3' miRNA: 3'- cGUAGCGGaaCCgu---CGu-UCCGGCGGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 404 | 0.67 | 0.511163 |
Target: 5'- gGCgAUUGgCUUGGCAGCc--GUCGCCa -3' miRNA: 3'- -CG-UAGCgGAACCGUCGuucCGGCGGc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 24870 | 0.66 | 0.531734 |
Target: 5'- aGCugCGCCaUGGCGGCGAucGCCGCg- -3' miRNA: 3'- -CGuaGCGGaACCGUCGUUc-CGGCGgc -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 19820 | 0.66 | 0.552598 |
Target: 5'- cGCAcCGCgUcgGGCAGCGGuGGCUGguCCGg -3' miRNA: 3'- -CGUaGCGgAa-CCGUCGUU-CCGGC--GGC- -5' |
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31782 | 3' | -58.8 | NC_006938.1 | + | 48090 | 0.66 | 0.563123 |
Target: 5'- aGCGUgaUGCCggaGGCGGCGAGGgaGuuGa -3' miRNA: 3'- -CGUA--GCGGaa-CCGUCGUUCCggCggC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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