Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31783 | 5' | -58.7 | NC_006938.1 | + | 9163 | 0.71 | 0.294978 |
Target: 5'- aGUGCGUCGccagcucugGCCACCgccgUGGCGCGcagauGGGCg -3' miRNA: 3'- -CAUGCGGU---------UGGUGGa---GCCGCGC-----CUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 61407 | 0.72 | 0.274196 |
Target: 5'- -aACGCaGACCAUgUCGGCGUGGcaccGGCc -3' miRNA: 3'- caUGCGgUUGGUGgAGCCGCGCC----UCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 11054 | 0.74 | 0.202151 |
Target: 5'- ---aGCCGAUCuccaugauggaguACCUCGGCGCgcuGGAGCg -3' miRNA: 3'- caugCGGUUGG-------------UGGAGCCGCG---CCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 60614 | 0.75 | 0.177981 |
Target: 5'- -aACGCCAACUucGCCaUCGGgGCGGcgAGCu -3' miRNA: 3'- caUGCGGUUGG--UGG-AGCCgCGCC--UCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 51231 | 0.68 | 0.444729 |
Target: 5'- uUGCGaCGGCCAUCUCGGCGCu---- -3' miRNA: 3'- cAUGCgGUUGGUGGAGCCGCGccucg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 39899 | 0.68 | 0.454233 |
Target: 5'- --uCGCCAccacggagacGCuCGCUUCGGCucGUGGGGCg -3' miRNA: 3'- cauGCGGU----------UG-GUGGAGCCG--CGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 52146 | 0.68 | 0.467722 |
Target: 5'- -gGCaGCCAACCAgcuccugcagcagcuCCUCGGUGgaGGAGg -3' miRNA: 3'- caUG-CGGUUGGU---------------GGAGCCGCg-CCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 46966 | 0.66 | 0.575503 |
Target: 5'- --cCGCCGACCGCCgacgagugGGCGCGcGucaccguGCg -3' miRNA: 3'- cauGCGGUUGGUGGag------CCGCGC-Cu------CG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 42406 | 0.66 | 0.565005 |
Target: 5'- -gGCGUCGAguucuUCGCCgacgCGGC-CGGAGCn -3' miRNA: 3'- caUGCGGUU-----GGUGGa---GCCGcGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 33771 | 0.66 | 0.554558 |
Target: 5'- --cCGCCAACgACCcCGGC-UGGaAGCa -3' miRNA: 3'- cauGCGGUUGgUGGaGCCGcGCC-UCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 19925 | 0.66 | 0.554558 |
Target: 5'- -aACGgCuuCC-CCgUCGGCGUGGAGg -3' miRNA: 3'- caUGCgGuuGGuGG-AGCCGCGCCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 11966 | 0.66 | 0.554558 |
Target: 5'- --gUGCC-ACCGCCUCagccGCGUgugGGAGCu -3' miRNA: 3'- cauGCGGuUGGUGGAGc---CGCG---CCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 57510 | 0.66 | 0.544168 |
Target: 5'- aGUuCGCCAACCgauACCUgCcaUGCGGAGCc -3' miRNA: 3'- -CAuGCGGUUGG---UGGA-GccGCGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 21083 | 0.67 | 0.533843 |
Target: 5'- -cACGaCGACCACCUucCGGCcccagcacgaGCGGAuGCu -3' miRNA: 3'- caUGCgGUUGGUGGA--GCCG----------CGCCU-CG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 20316 | 0.67 | 0.523588 |
Target: 5'- -gACGUCAACCACauccaUGGCugGCuGGAGCu -3' miRNA: 3'- caUGCGGUUGGUGga---GCCG--CG-CCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 54397 | 0.67 | 0.513409 |
Target: 5'- -cACGCC-ACCugUcgCGGC-CGGAGUc -3' miRNA: 3'- caUGCGGuUGGugGa-GCCGcGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 55275 | 0.67 | 0.503313 |
Target: 5'- -cACGCCcacGCCACC-CGGCGCaaGGUc -3' miRNA: 3'- caUGCGGu--UGGUGGaGCCGCGccUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 17200 | 0.67 | 0.493303 |
Target: 5'- gGUGgGCCAgcuggucuGCCACCUC--CGCGaGGGCa -3' miRNA: 3'- -CAUgCGGU--------UGGUGGAGccGCGC-CUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 34238 | 0.67 | 0.493303 |
Target: 5'- aGUAcCGCguGCuCAuCCUCGGCgagGCGGAGg -3' miRNA: 3'- -CAU-GCGguUG-GU-GGAGCCG---CGCCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 1564 | 1.11 | 0.000413 |
Target: 5'- cGUACGCCAACCACCUCGGCGCGGAGCu -3' miRNA: 3'- -CAUGCGGUUGGUGGAGCCGCGCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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