miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31783 5' -58.7 NC_006938.1 + 47720 0.79 0.08825
Target:  5'- gGUACGCUGcACCACCUcCGGUGCcGAGCg -3'
miRNA:   3'- -CAUGCGGU-UGGUGGA-GCCGCGcCUCG- -5'
31783 5' -58.7 NC_006938.1 + 30929 0.69 0.386686
Target:  5'- aGUGCcCCAGagACCUCGGCGaccuccuccaggaGGAGCu -3'
miRNA:   3'- -CAUGcGGUUggUGGAGCCGCg------------CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 48488 0.72 0.261003
Target:  5'- uGUAgGCCGugGCCGCCUCGauCGUGGAGa -3'
miRNA:   3'- -CAUgCGGU--UGGUGGAGCc-GCGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 50291 0.67 0.503313
Target:  5'- ---aGCCAGCCgguGCCU-GG-GCGGAGUa -3'
miRNA:   3'- caugCGGUUGG---UGGAgCCgCGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 39230 0.79 0.095855
Target:  5'- -gACGCCuggcguuCCACCUCGGUcgggaccuugGCGGAGCc -3'
miRNA:   3'- caUGCGGuu-----GGUGGAGCCG----------CGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 19829 0.67 0.503313
Target:  5'- -aGCGCCuuccgcACCGCgUCGGgcaGCGGuGGCu -3'
miRNA:   3'- caUGCGGu-----UGGUGgAGCCg--CGCC-UCG- -5'
31783 5' -58.7 NC_006938.1 + 1824 0.67 0.503313
Target:  5'- -gGgGCCAGuuGCCacCGGC-CGGAGCu -3'
miRNA:   3'- caUgCGGUUggUGGa-GCCGcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 8110 0.7 0.372974
Target:  5'- cUugGCCuccgugaagaAGCCACCUCccaugacgGGCG-GGAGCu -3'
miRNA:   3'- cAugCGG----------UUGGUGGAG--------CCGCgCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 42438 0.7 0.34817
Target:  5'- -gACGCCuGCCAcucCCUCGGC-CGGAa- -3'
miRNA:   3'- caUGCGGuUGGU---GGAGCCGcGCCUcg -5'
31783 5' -58.7 NC_006938.1 + 46966 0.66 0.575503
Target:  5'- --cCGCCGACCGCCgacgagugGGCGCGcGucaccguGCg -3'
miRNA:   3'- cauGCGGUUGGUGGag------CCGCGC-Cu------CG- -5'
31783 5' -58.7 NC_006938.1 + 42406 0.66 0.565005
Target:  5'- -gGCGUCGAguucuUCGCCgacgCGGC-CGGAGCn -3'
miRNA:   3'- caUGCGGUU-----GGUGGa---GCCGcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 51231 0.68 0.444729
Target:  5'- uUGCGaCGGCCAUCUCGGCGCu---- -3'
miRNA:   3'- cAUGCgGUUGGUGGAGCCGCGccucg -5'
31783 5' -58.7 NC_006938.1 + 3920 0.68 0.435337
Target:  5'- cGUGgGCCucguucaaGACCuACUUCGGCGUGuGGCg -3'
miRNA:   3'- -CAUgCGG--------UUGG-UGGAGCCGCGCcUCG- -5'
31783 5' -58.7 NC_006938.1 + 28 0.68 0.42606
Target:  5'- ---gGCuCGACCACCgUCGaCGCGGAGa -3'
miRNA:   3'- caugCG-GUUGGUGG-AGCcGCGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 19729 0.69 0.416903
Target:  5'- ---gGaCCAGCCACCgcugcccgacgCGGUGCGGAagGCg -3'
miRNA:   3'- caugC-GGUUGGUGGa----------GCCGCGCCU--CG- -5'
31783 5' -58.7 NC_006938.1 + 29781 0.66 0.544168
Target:  5'- -gGCaGCCAuCCGgCUCGGCcgaGGGGCc -3'
miRNA:   3'- caUG-CGGUuGGUgGAGCCGcg-CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 57510 0.66 0.544168
Target:  5'- aGUuCGCCAACCgauACCUgCcaUGCGGAGCc -3'
miRNA:   3'- -CAuGCGGUUGG---UGGA-GccGCGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 11966 0.66 0.554558
Target:  5'- --gUGCC-ACCGCCUCagccGCGUgugGGAGCu -3'
miRNA:   3'- cauGCGGuUGGUGGAGc---CGCG---CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 19925 0.66 0.554558
Target:  5'- -aACGgCuuCC-CCgUCGGCGUGGAGg -3'
miRNA:   3'- caUGCgGuuGGuGG-AGCCGCGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 33771 0.66 0.554558
Target:  5'- --cCGCCAACgACCcCGGC-UGGaAGCa -3'
miRNA:   3'- cauGCGGUUGgUGGaGCCGcGCC-UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.