miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31783 5' -58.7 NC_006938.1 + 37597 0.66 0.596622
Target:  5'- -aGCGgCGGCgGCCUCGaGCuCGGGGa -3'
miRNA:   3'- caUGCgGUUGgUGGAGC-CGcGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 18696 0.69 0.407866
Target:  5'- gGUACuUCugcGCCGCCUCGGaCGCGccGGGCa -3'
miRNA:   3'- -CAUGcGGu--UGGUGGAGCC-GCGC--CUCG- -5'
31783 5' -58.7 NC_006938.1 + 30929 0.69 0.386686
Target:  5'- aGUGCcCCAGagACCUCGGCGaccuccuccaggaGGAGCu -3'
miRNA:   3'- -CAUGcGGUUggUGGAGCCGCg------------CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 47720 0.79 0.08825
Target:  5'- gGUACGCUGcACCACCUcCGGUGCcGAGCg -3'
miRNA:   3'- -CAUGCGGU-UGGUGGA-GCCGCGcCUCG- -5'
31783 5' -58.7 NC_006938.1 + 10411 0.66 0.575503
Target:  5'- gGUGCaGCCcuuggcACCGCCcucccaGGCGCGGaAGUa -3'
miRNA:   3'- -CAUG-CGGu-----UGGUGGag----CCGCGCC-UCG- -5'
31783 5' -58.7 NC_006938.1 + 35728 0.66 0.548317
Target:  5'- -cGCGCCA--CACCUCGGCGgacuucuccaggccuCcGAGCg -3'
miRNA:   3'- caUGCGGUugGUGGAGCCGC---------------GcCUCG- -5'
31783 5' -58.7 NC_006938.1 + 11599 0.67 0.533843
Target:  5'- -gAUGUCGGCCGCCUUGcGCGCcucGCg -3'
miRNA:   3'- caUGCGGUUGGUGGAGC-CGCGccuCG- -5'
31783 5' -58.7 NC_006938.1 + 29352 0.67 0.523588
Target:  5'- --cCGCUGGCCGCaaaCGGCGCGGccgauuGCc -3'
miRNA:   3'- cauGCGGUUGGUGga-GCCGCGCCu-----CG- -5'
31783 5' -58.7 NC_006938.1 + 50291 0.67 0.503313
Target:  5'- ---aGCCAGCCgguGCCU-GG-GCGGAGUa -3'
miRNA:   3'- caugCGGUUGG---UGGAgCCgCGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 15173 0.69 0.416903
Target:  5'- gGUACGCgAG--ACCUCGGgGCaGGGCg -3'
miRNA:   3'- -CAUGCGgUUggUGGAGCCgCGcCUCG- -5'
31783 5' -58.7 NC_006938.1 + 32748 0.68 0.477482
Target:  5'- cGUACGUCuuccuccggaugauGCCGuCCUUGGC-UGGAGCu -3'
miRNA:   3'- -CAUGCGGu-------------UGGU-GGAGCCGcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 19829 0.67 0.503313
Target:  5'- -aGCGCCuuccgcACCGCgUCGGgcaGCGGuGGCu -3'
miRNA:   3'- caUGCGGu-----UGGUGgAGCCg--CGCC-UCG- -5'
31783 5' -58.7 NC_006938.1 + 55200 0.66 0.596622
Target:  5'- -gACGCaggaaggauCCAUCaggUCGGCGCGGAuacGCg -3'
miRNA:   3'- caUGCGguu------GGUGG---AGCCGCGCCU---CG- -5'
31783 5' -58.7 NC_006938.1 + 47058 0.68 0.463847
Target:  5'- -gACGCgCGcCCACUcgUCGGCggucgGCGGAGUg -3'
miRNA:   3'- caUGCG-GUuGGUGG--AGCCG-----CGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 12618 0.66 0.586045
Target:  5'- -cAgGCCuGCCggaACCUCGG-GCcGGGGCu -3'
miRNA:   3'- caUgCGGuUGG---UGGAGCCgCG-CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 1824 0.67 0.503313
Target:  5'- -gGgGCCAGuuGCCacCGGC-CGGAGCu -3'
miRNA:   3'- caUgCGGUUggUGGa-GCCGcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 7222 0.68 0.454233
Target:  5'- -aGCGCUcgGACCGCUcCGGa-CGGAGCu -3'
miRNA:   3'- caUGCGG--UUGGUGGaGCCgcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 23653 0.69 0.407866
Target:  5'- -cGCGaggaCCAGCUugucguagACCUCGGUGCGGAauGCc -3'
miRNA:   3'- caUGC----GGUUGG--------UGGAGCCGCGCCU--CG- -5'
31783 5' -58.7 NC_006938.1 + 44132 0.66 0.579715
Target:  5'- -cGCGCCAgucccgguuGCCACCUCcauucccgccgaGGcCagaccgaugaacaucGCGGAGCg -3'
miRNA:   3'- caUGCGGU---------UGGUGGAG------------CC-G---------------CGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 50998 0.66 0.544168
Target:  5'- -cAgGCCcucGGCCGCCUCgcggaaGGCGuuGAGCa -3'
miRNA:   3'- caUgCGG---UUGGUGGAG------CCGCgcCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.