miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31783 5' -58.7 NC_006938.1 + 54397 0.67 0.513409
Target:  5'- -cACGCC-ACCugUcgCGGC-CGGAGUc -3'
miRNA:   3'- caUGCGGuUGGugGa-GCCGcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 28 0.68 0.42606
Target:  5'- ---gGCuCGACCACCgUCGaCGCGGAGa -3'
miRNA:   3'- caugCG-GUUGGUGG-AGCcGCGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 3920 0.68 0.435337
Target:  5'- cGUGgGCCucguucaaGACCuACUUCGGCGUGuGGCg -3'
miRNA:   3'- -CAUgCGG--------UUGG-UGGAGCCGCGCcUCG- -5'
31783 5' -58.7 NC_006938.1 + 51231 0.68 0.444729
Target:  5'- uUGCGaCGGCCAUCUCGGCGCu---- -3'
miRNA:   3'- cAUGCgGUUGGUGGAGCCGCGccucg -5'
31783 5' -58.7 NC_006938.1 + 39899 0.68 0.454233
Target:  5'- --uCGCCAccacggagacGCuCGCUUCGGCucGUGGGGCg -3'
miRNA:   3'- cauGCGGU----------UG-GUGGAGCCG--CGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 52146 0.68 0.467722
Target:  5'- -gGCaGCCAACCAgcuccugcagcagcuCCUCGGUGgaGGAGg -3'
miRNA:   3'- caUG-CGGUUGGU---------------GGAGCCGCg-CCUCg -5'
31783 5' -58.7 NC_006938.1 + 34238 0.67 0.493303
Target:  5'- aGUAcCGCguGCuCAuCCUCGGCgagGCGGAGg -3'
miRNA:   3'- -CAU-GCGguUG-GU-GGAGCCG---CGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 17200 0.67 0.493303
Target:  5'- gGUGgGCCAgcuggucuGCCACCUC--CGCGaGGGCa -3'
miRNA:   3'- -CAUgCGGU--------UGGUGGAGccGCGC-CUCG- -5'
31783 5' -58.7 NC_006938.1 + 55275 0.67 0.503313
Target:  5'- -cACGCCcacGCCACC-CGGCGCaaGGUc -3'
miRNA:   3'- caUGCGGu--UGGUGGaGCCGCGccUCG- -5'
31783 5' -58.7 NC_006938.1 + 19729 0.69 0.416903
Target:  5'- ---gGaCCAGCCACCgcugcccgacgCGGUGCGGAagGCg -3'
miRNA:   3'- caugC-GGUUGGUGGa----------GCCGCGCCU--CG- -5'
31783 5' -58.7 NC_006938.1 + 38982 0.69 0.407866
Target:  5'- -gAUcCCGACguuCCUCGGUGCGGAGg -3'
miRNA:   3'- caUGcGGUUGgu-GGAGCCGCGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 41543 0.69 0.407866
Target:  5'- -aGCcCCGGCCAacuUCUCGGUGgUGGAGCc -3'
miRNA:   3'- caUGcGGUUGGU---GGAGCCGC-GCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 60614 0.75 0.177981
Target:  5'- -aACGCCAACUucGCCaUCGGgGCGGcgAGCu -3'
miRNA:   3'- caUGCGGUUGG--UGG-AGCCgCGCC--UCG- -5'
31783 5' -58.7 NC_006938.1 + 11054 0.74 0.202151
Target:  5'- ---aGCCGAUCuccaugauggaguACCUCGGCGCgcuGGAGCg -3'
miRNA:   3'- caugCGGUUGG-------------UGGAGCCGCG---CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 61407 0.72 0.274196
Target:  5'- -aACGCaGACCAUgUCGGCGUGGcaccGGCc -3'
miRNA:   3'- caUGCGgUUGGUGgAGCCGCGCC----UCG- -5'
31783 5' -58.7 NC_006938.1 + 9163 0.71 0.294978
Target:  5'- aGUGCGUCGccagcucugGCCACCgccgUGGCGCGcagauGGGCg -3'
miRNA:   3'- -CAUGCGGU---------UGGUGGa---GCCGCGC-----CUCG- -5'
31783 5' -58.7 NC_006938.1 + 21262 0.71 0.302173
Target:  5'- --cCGCCGACCcgucGCUguUCGaCGCGGAGCg -3'
miRNA:   3'- cauGCGGUUGG----UGG--AGCcGCGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 42438 0.7 0.34817
Target:  5'- -gACGCCuGCCAcucCCUCGGC-CGGAa- -3'
miRNA:   3'- caUGCGGuUGGU---GGAGCCGcGCCUcg -5'
31783 5' -58.7 NC_006938.1 + 34543 0.7 0.36208
Target:  5'- -gGCGCCAACCugcaggacgagcagGCCagGGU-CGGAGCg -3'
miRNA:   3'- caUGCGGUUGG--------------UGGagCCGcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 48022 0.69 0.398953
Target:  5'- -cACGCuCGACaagACCUcgggCGGCGCGGAcgGCa -3'
miRNA:   3'- caUGCG-GUUGg--UGGA----GCCGCGCCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.