Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31783 | 5' | -58.7 | NC_006938.1 | + | 20316 | 0.67 | 0.523588 |
Target: 5'- -gACGUCAACCACauccaUGGCugGCuGGAGCu -3' miRNA: 3'- caUGCGGUUGGUGga---GCCG--CG-CCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 20939 | 0.74 | 0.194463 |
Target: 5'- -gACGCCGaggucucggGCCACCUCGcgcugugucuugcccGCGCGGcGGCg -3' miRNA: 3'- caUGCGGU---------UGGUGGAGC---------------CGCGCC-UCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 21083 | 0.67 | 0.533843 |
Target: 5'- -cACGaCGACCACCUucCGGCcccagcacgaGCGGAuGCu -3' miRNA: 3'- caUGCgGUUGGUGGA--GCCG----------CGCCU-CG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 21262 | 0.71 | 0.302173 |
Target: 5'- --cCGCCGACCcgucGCUguUCGaCGCGGAGCg -3' miRNA: 3'- cauGCGGUUGG----UGG--AGCcGCGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 22642 | 0.67 | 0.493303 |
Target: 5'- -gGCGUgGACCagcACCUUGuCGCGGAGg -3' miRNA: 3'- caUGCGgUUGG---UGGAGCcGCGCCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 23653 | 0.69 | 0.407866 |
Target: 5'- -cGCGaggaCCAGCUugucguagACCUCGGUGCGGAauGCc -3' miRNA: 3'- caUGC----GGUUGG--------UGGAGCCGCGCCU--CG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 29352 | 0.67 | 0.523588 |
Target: 5'- --cCGCUGGCCGCaaaCGGCGCGGccgauuGCc -3' miRNA: 3'- cauGCGGUUGGUGga-GCCGCGCCu-----CG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 29781 | 0.66 | 0.544168 |
Target: 5'- -gGCaGCCAuCCGgCUCGGCcgaGGGGCc -3' miRNA: 3'- caUG-CGGUuGGUgGAGCCGcg-CCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 30929 | 0.69 | 0.386686 |
Target: 5'- aGUGCcCCAGagACCUCGGCGaccuccuccaggaGGAGCu -3' miRNA: 3'- -CAUGcGGUUggUGGAGCCGCg------------CCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 32748 | 0.68 | 0.477482 |
Target: 5'- cGUACGUCuuccuccggaugauGCCGuCCUUGGC-UGGAGCu -3' miRNA: 3'- -CAUGCGGu-------------UGGU-GGAGCCGcGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 33166 | 0.7 | 0.367081 |
Target: 5'- uUGCGCCAGCCAUaccaCUCGGCcacccuguacaggucGCcacggacGGAGCu -3' miRNA: 3'- cAUGCGGUUGGUG----GAGCCG---------------CG-------CCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 33771 | 0.66 | 0.554558 |
Target: 5'- --cCGCCAACgACCcCGGC-UGGaAGCa -3' miRNA: 3'- cauGCGGUUGgUGGaGCCGcGCC-UCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 34238 | 0.67 | 0.493303 |
Target: 5'- aGUAcCGCguGCuCAuCCUCGGCgagGCGGAGg -3' miRNA: 3'- -CAU-GCGguUG-GU-GGAGCCG---CGCCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 34543 | 0.7 | 0.36208 |
Target: 5'- -gGCGCCAACCugcaggacgagcagGCCagGGU-CGGAGCg -3' miRNA: 3'- caUGCGGUUGG--------------UGGagCCGcGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 35728 | 0.66 | 0.548317 |
Target: 5'- -cGCGCCA--CACCUCGGCGgacuucuccaggccuCcGAGCg -3' miRNA: 3'- caUGCGGUugGUGGAGCCGC---------------GcCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 37597 | 0.66 | 0.596622 |
Target: 5'- -aGCGgCGGCgGCCUCGaGCuCGGGGa -3' miRNA: 3'- caUGCgGUUGgUGGAGC-CGcGCCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 38982 | 0.69 | 0.407866 |
Target: 5'- -gAUcCCGACguuCCUCGGUGCGGAGg -3' miRNA: 3'- caUGcGGUUGgu-GGAGCCGCGCCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 39230 | 0.79 | 0.095855 |
Target: 5'- -gACGCCuggcguuCCACCUCGGUcgggaccuugGCGGAGCc -3' miRNA: 3'- caUGCGGuu-----GGUGGAGCCG----------CGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 39899 | 0.68 | 0.454233 |
Target: 5'- --uCGCCAccacggagacGCuCGCUUCGGCucGUGGGGCg -3' miRNA: 3'- cauGCGGU----------UG-GUGGAGCCG--CGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 41543 | 0.69 | 0.407866 |
Target: 5'- -aGCcCCGGCCAacuUCUCGGUGgUGGAGCc -3' miRNA: 3'- caUGcGGUUGGU---GGAGCCGC-GCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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