Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31783 | 5' | -58.7 | NC_006938.1 | + | 54397 | 0.67 | 0.513409 |
Target: 5'- -cACGCC-ACCugUcgCGGC-CGGAGUc -3' miRNA: 3'- caUGCGGuUGGugGa-GCCGcGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 55275 | 0.67 | 0.503313 |
Target: 5'- -cACGCCcacGCCACC-CGGCGCaaGGUc -3' miRNA: 3'- caUGCGGu--UGGUGGaGCCGCGccUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 19829 | 0.67 | 0.503313 |
Target: 5'- -aGCGCCuuccgcACCGCgUCGGgcaGCGGuGGCu -3' miRNA: 3'- caUGCGGu-----UGGUGgAGCCg--CGCC-UCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 50291 | 0.67 | 0.503313 |
Target: 5'- ---aGCCAGCCgguGCCU-GG-GCGGAGUa -3' miRNA: 3'- caugCGGUUGG---UGGAgCCgCGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 1824 | 0.67 | 0.503313 |
Target: 5'- -gGgGCCAGuuGCCacCGGC-CGGAGCu -3' miRNA: 3'- caUgCGGUUggUGGa-GCCGcGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 34238 | 0.67 | 0.493303 |
Target: 5'- aGUAcCGCguGCuCAuCCUCGGCgagGCGGAGg -3' miRNA: 3'- -CAU-GCGguUG-GU-GGAGCCG---CGCCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 22642 | 0.67 | 0.493303 |
Target: 5'- -gGCGUgGACCagcACCUUGuCGCGGAGg -3' miRNA: 3'- caUGCGgUUGG---UGGAGCcGCGCCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 17200 | 0.67 | 0.493303 |
Target: 5'- gGUGgGCCAgcuggucuGCCACCUC--CGCGaGGGCa -3' miRNA: 3'- -CAUgCGGU--------UGGUGGAGccGCGC-CUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 32748 | 0.68 | 0.477482 |
Target: 5'- cGUACGUCuuccuccggaugauGCCGuCCUUGGC-UGGAGCu -3' miRNA: 3'- -CAUGCGGu-------------UGGU-GGAGCCGcGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 52146 | 0.68 | 0.467722 |
Target: 5'- -gGCaGCCAACCAgcuccugcagcagcuCCUCGGUGgaGGAGg -3' miRNA: 3'- caUG-CGGUUGGU---------------GGAGCCGCg-CCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 47058 | 0.68 | 0.463847 |
Target: 5'- -gACGCgCGcCCACUcgUCGGCggucgGCGGAGUg -3' miRNA: 3'- caUGCG-GUuGGUGG--AGCCG-----CGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 7222 | 0.68 | 0.454233 |
Target: 5'- -aGCGCUcgGACCGCUcCGGa-CGGAGCu -3' miRNA: 3'- caUGCGG--UUGGUGGaGCCgcGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 39899 | 0.68 | 0.454233 |
Target: 5'- --uCGCCAccacggagacGCuCGCUUCGGCucGUGGGGCg -3' miRNA: 3'- cauGCGGU----------UG-GUGGAGCCG--CGCCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 51231 | 0.68 | 0.444729 |
Target: 5'- uUGCGaCGGCCAUCUCGGCGCu---- -3' miRNA: 3'- cAUGCgGUUGGUGGAGCCGCGccucg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 3920 | 0.68 | 0.435337 |
Target: 5'- cGUGgGCCucguucaaGACCuACUUCGGCGUGuGGCg -3' miRNA: 3'- -CAUgCGG--------UUGG-UGGAGCCGCGCcUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 28 | 0.68 | 0.42606 |
Target: 5'- ---gGCuCGACCACCgUCGaCGCGGAGa -3' miRNA: 3'- caugCG-GUUGGUGG-AGCcGCGCCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 15173 | 0.69 | 0.416903 |
Target: 5'- gGUACGCgAG--ACCUCGGgGCaGGGCg -3' miRNA: 3'- -CAUGCGgUUggUGGAGCCgCGcCUCG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 19729 | 0.69 | 0.416903 |
Target: 5'- ---gGaCCAGCCACCgcugcccgacgCGGUGCGGAagGCg -3' miRNA: 3'- caugC-GGUUGGUGGa----------GCCGCGCCU--CG- -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 38982 | 0.69 | 0.407866 |
Target: 5'- -gAUcCCGACguuCCUCGGUGCGGAGg -3' miRNA: 3'- caUGcGGUUGgu-GGAGCCGCGCCUCg -5' |
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31783 | 5' | -58.7 | NC_006938.1 | + | 41543 | 0.69 | 0.407866 |
Target: 5'- -aGCcCCGGCCAacuUCUCGGUGgUGGAGCc -3' miRNA: 3'- caUGcGGUUGGU---GGAGCCGC-GCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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