miRNA display CGI


Results 61 - 80 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 47950 0.68 0.748085
Target:  5'- gUCGGCCguggUCGACuGC-AGGACGGGGa -3'
miRNA:   3'- -GGCUGGa---GGCUGcUGuUCCUGUUCCg -5'
31784 5' -54 NC_006938.1 + 24758 0.68 0.748085
Target:  5'- -gGGCUUCCGGCccaGCAagaAGGGCGcGGCg -3'
miRNA:   3'- ggCUGGAGGCUGc--UGU---UCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 18015 0.68 0.737835
Target:  5'- -gGAgCUCCagGAUccuCAGGGGCAGGGCg -3'
miRNA:   3'- ggCUgGAGG--CUGcu-GUUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 46685 0.68 0.737835
Target:  5'- aCgGACCUCCucguCGGCAgcugGGGagcGCGGGGCc -3'
miRNA:   3'- -GgCUGGAGGcu--GCUGU----UCC---UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 53233 0.68 0.737835
Target:  5'- uCgGAUCUCC-ACGAUggGGAUGuucGGCg -3'
miRNA:   3'- -GgCUGGAGGcUGCUGuuCCUGUu--CCG- -5'
31784 5' -54 NC_006938.1 + 11493 0.68 0.737835
Target:  5'- gUGACUucuuUCCGAUucGCGAGGcgcGCAAGGCg -3'
miRNA:   3'- gGCUGG----AGGCUGc-UGUUCC---UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 19049 0.68 0.737835
Target:  5'- gCGGCCauggUCG-CGGC--GGACGAGGCg -3'
miRNA:   3'- gGCUGGa---GGCuGCUGuuCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 52202 0.68 0.737835
Target:  5'- gUGGCauCUUCGGCGGCcuguuuGGugGAGGCg -3'
miRNA:   3'- gGCUG--GAGGCUGCUGuu----CCugUUCCG- -5'
31784 5' -54 NC_006938.1 + 34677 0.68 0.727483
Target:  5'- gUCGGCgUCCGuCGGCAGGucgaGCcGGGCa -3'
miRNA:   3'- -GGCUGgAGGCuGCUGUUCc---UGuUCCG- -5'
31784 5' -54 NC_006938.1 + 50069 0.68 0.727483
Target:  5'- aCCGAgCgcggCCGGaguCGACAGGaGugGAGGUc -3'
miRNA:   3'- -GGCUgGa---GGCU---GCUGUUC-CugUUCCG- -5'
31784 5' -54 NC_006938.1 + 15186 0.68 0.726443
Target:  5'- cCUGACUcCCGgagguacGCGAgAccucGGGGCAGGGCg -3'
miRNA:   3'- -GGCUGGaGGC-------UGCUgU----UCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 23042 0.69 0.71704
Target:  5'- uCUGGCaCUCCuACGuCAAGGACAugcAGGa -3'
miRNA:   3'- -GGCUG-GAGGcUGCuGUUCCUGU---UCCg -5'
31784 5' -54 NC_006938.1 + 22421 0.69 0.715991
Target:  5'- aCGGCC-CUGgucaugcGCGGCAAGGA--GGGCa -3'
miRNA:   3'- gGCUGGaGGC-------UGCUGUUCCUguUCCG- -5'
31784 5' -54 NC_006938.1 + 25761 0.69 0.706515
Target:  5'- aUGugCUCCGugGugGucuGGGccaccuccccgaGCGAGGCc -3'
miRNA:   3'- gGCugGAGGCugCugU---UCC------------UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 50130 0.69 0.706515
Target:  5'- uUCGcACCUUCGAUGGaGAGGGCGAGa- -3'
miRNA:   3'- -GGC-UGGAGGCUGCUgUUCCUGUUCcg -5'
31784 5' -54 NC_006938.1 + 46968 0.69 0.695921
Target:  5'- gCCGACCgCCGACGAgu-GGGCGc-GCg -3'
miRNA:   3'- -GGCUGGaGGCUGCUguuCCUGUucCG- -5'
31784 5' -54 NC_006938.1 + 48344 0.69 0.685267
Target:  5'- cCCGGC-UCgGGCGGCGGuGACGAGcGCg -3'
miRNA:   3'- -GGCUGgAGgCUGCUGUUcCUGUUC-CG- -5'
31784 5' -54 NC_006938.1 + 2733 0.69 0.674564
Target:  5'- aCGACCacUCCGcCGcCAuccuGGACGGGGUc -3'
miRNA:   3'- gGCUGG--AGGCuGCuGUu---CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 50951 0.7 0.663823
Target:  5'- aCGACCgucCCGACGAUc--GGCcAGGCg -3'
miRNA:   3'- gGCUGGa--GGCUGCUGuucCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 12905 0.7 0.653053
Target:  5'- cCCG-CCUCCuugggcuCGACAAGGACAccuucaAGaGCg -3'
miRNA:   3'- -GGCuGGAGGcu-----GCUGUUCCUGU------UC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.