miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 43054 0.67 0.816061
Target:  5'- cCCGuuugaCUCCGACGAgAcgaccGGGACGAG-Cu -3'
miRNA:   3'- -GGCug---GAGGCUGCUgU-----UCCUGUUCcG- -5'
31784 5' -54 NC_006938.1 + 40469 0.67 0.816061
Target:  5'- aCGAcacuCCUCCGACGgACGAc--CAGGGCc -3'
miRNA:   3'- gGCU----GGAGGCUGC-UGUUccuGUUCCG- -5'
31784 5' -54 NC_006938.1 + 33381 0.67 0.816061
Target:  5'- gCCGGuCC-CaacaggGACGACAAGGGCAccauccuuGGCa -3'
miRNA:   3'- -GGCU-GGaGg-----CUGCUGUUCCUGUu-------CCG- -5'
31784 5' -54 NC_006938.1 + 18364 0.67 0.816061
Target:  5'- aCUGcuCCUUcaaccagauggCGGCgGACAAGGACAAcGGCa -3'
miRNA:   3'- -GGCu-GGAG-----------GCUG-CUGUUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 17767 0.67 0.816061
Target:  5'- cUCGA-CUCCGuCGcCGGGGACu-GGCu -3'
miRNA:   3'- -GGCUgGAGGCuGCuGUUCCUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 4440 0.67 0.806827
Target:  5'- gCCGuGCgCUuuGACGgguccaucaGCGAGGACGagaGGGCc -3'
miRNA:   3'- -GGC-UG-GAggCUGC---------UGUUCCUGU---UCCG- -5'
31784 5' -54 NC_006938.1 + 37084 0.67 0.797418
Target:  5'- cCUGACCUCgGACaGCAugAGGAUcAGaGCc -3'
miRNA:   3'- -GGCUGGAGgCUGcUGU--UCCUGuUC-CG- -5'
31784 5' -54 NC_006938.1 + 18511 0.67 0.797418
Target:  5'- aCCGGCCg--GACGACGGuGGCcucuGGGCg -3'
miRNA:   3'- -GGCUGGaggCUGCUGUUcCUGu---UCCG- -5'
31784 5' -54 NC_006938.1 + 52305 0.67 0.797418
Target:  5'- cUCGAuCCUCauCGGCGGCcAGGGC--GGCa -3'
miRNA:   3'- -GGCU-GGAG--GCUGCUGuUCCUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 27532 0.67 0.797418
Target:  5'- cUCGGCCgcUCCGcCG-CAgaaGGGACAuGGCu -3'
miRNA:   3'- -GGCUGG--AGGCuGCuGU---UCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 41687 0.67 0.797418
Target:  5'- cCUGGCCgugCCGACGuugauCcGGGGCA-GGUu -3'
miRNA:   3'- -GGCUGGa--GGCUGCu----GuUCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 17644 0.67 0.77811
Target:  5'- gCCaACCUCgGcuACGACcuGGACuGGGCc -3'
miRNA:   3'- -GGcUGGAGgC--UGCUGuuCCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 46495 0.67 0.77811
Target:  5'- -gGAgCUgaUCGGCGGC-GGGAUAGGGCc -3'
miRNA:   3'- ggCUgGA--GGCUGCUGuUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 17241 0.67 0.777129
Target:  5'- gCGAUCUCCaGGuccugucCGGCGAGGACcuuGGUg -3'
miRNA:   3'- gGCUGGAGG-CU-------GCUGUUCCUGuu-CCG- -5'
31784 5' -54 NC_006938.1 + 3686 0.67 0.775162
Target:  5'- -aGAUgCUCCGugaGCGACGGugcgcguucauccuGGACGAGGCc -3'
miRNA:   3'- ggCUG-GAGGC---UGCUGUU--------------CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 36718 0.68 0.768233
Target:  5'- uCCGuCCgcucgUCGACGACAucGGCAAccGGCu -3'
miRNA:   3'- -GGCuGGa----GGCUGCUGUucCUGUU--CCG- -5'
31784 5' -54 NC_006938.1 + 28336 0.68 0.768233
Target:  5'- gCGACCagcaagUCCGGgGcCAAGGugAuGGCu -3'
miRNA:   3'- gGCUGG------AGGCUgCuGUUCCugUuCCG- -5'
31784 5' -54 NC_006938.1 + 55648 0.68 0.748085
Target:  5'- -aGACCagCGgagGCGGCAAGGGCGgccugggaggaGGGCc -3'
miRNA:   3'- ggCUGGagGC---UGCUGUUCCUGU-----------UCCG- -5'
31784 5' -54 NC_006938.1 + 25497 0.68 0.748085
Target:  5'- gCGACCg-CGACGGCAacauccgcaaGGGugGcuggaAGGCa -3'
miRNA:   3'- gGCUGGagGCUGCUGU----------UCCugU-----UCCG- -5'
31784 5' -54 NC_006938.1 + 18464 0.68 0.748085
Target:  5'- gCaGCCgUCCcGCGACGAGGACAucGCc -3'
miRNA:   3'- gGcUGG-AGGcUGCUGUUCCUGUucCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.