miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 23042 0.69 0.71704
Target:  5'- uCUGGCaCUCCuACGuCAAGGACAugcAGGa -3'
miRNA:   3'- -GGCUG-GAGGcUGCuGUUCCUGU---UCCg -5'
31784 5' -54 NC_006938.1 + 15186 0.68 0.726443
Target:  5'- cCUGACUcCCGgagguacGCGAgAccucGGGGCAGGGCg -3'
miRNA:   3'- -GGCUGGaGGC-------UGCUgU----UCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 50069 0.68 0.727483
Target:  5'- aCCGAgCgcggCCGGaguCGACAGGaGugGAGGUc -3'
miRNA:   3'- -GGCUgGa---GGCU---GCUGUUC-CugUUCCG- -5'
31784 5' -54 NC_006938.1 + 34677 0.68 0.727483
Target:  5'- gUCGGCgUCCGuCGGCAGGucgaGCcGGGCa -3'
miRNA:   3'- -GGCUGgAGGCuGCUGUUCc---UGuUCCG- -5'
31784 5' -54 NC_006938.1 + 18015 0.68 0.737835
Target:  5'- -gGAgCUCCagGAUccuCAGGGGCAGGGCg -3'
miRNA:   3'- ggCUgGAGG--CUGcu-GUUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 46685 0.68 0.737835
Target:  5'- aCgGACCUCCucguCGGCAgcugGGGagcGCGGGGCc -3'
miRNA:   3'- -GgCUGGAGGcu--GCUGU----UCC---UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 53233 0.68 0.737835
Target:  5'- uCgGAUCUCC-ACGAUggGGAUGuucGGCg -3'
miRNA:   3'- -GgCUGGAGGcUGCUGuuCCUGUu--CCG- -5'
31784 5' -54 NC_006938.1 + 52202 0.68 0.737835
Target:  5'- gUGGCauCUUCGGCGGCcuguuuGGugGAGGCg -3'
miRNA:   3'- gGCUG--GAGGCUGCUGuu----CCugUUCCG- -5'
31784 5' -54 NC_006938.1 + 19049 0.68 0.737835
Target:  5'- gCGGCCauggUCG-CGGC--GGACGAGGCg -3'
miRNA:   3'- gGCUGGa---GGCuGCUGuuCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 11493 0.68 0.737835
Target:  5'- gUGACUucuuUCCGAUucGCGAGGcgcGCAAGGCg -3'
miRNA:   3'- gGCUGG----AGGCUGc-UGUUCC---UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 25497 0.68 0.748085
Target:  5'- gCGACCg-CGACGGCAacauccgcaaGGGugGcuggaAGGCa -3'
miRNA:   3'- gGCUGGagGCUGCUGU----------UCCugU-----UCCG- -5'
31784 5' -54 NC_006938.1 + 18464 0.68 0.748085
Target:  5'- gCaGCCgUCCcGCGACGAGGACAucGCc -3'
miRNA:   3'- gGcUGG-AGGcUGCUGUUCCUGUucCG- -5'
31784 5' -54 NC_006938.1 + 55648 0.68 0.748085
Target:  5'- -aGACCagCGgagGCGGCAAGGGCGgccugggaggaGGGCc -3'
miRNA:   3'- ggCUGGagGC---UGCUGUUCCUGU-----------UCCG- -5'
31784 5' -54 NC_006938.1 + 24758 0.68 0.748085
Target:  5'- -gGGCUUCCGGCccaGCAagaAGGGCGcGGCg -3'
miRNA:   3'- ggCUGGAGGCUGc--UGU---UCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 47950 0.68 0.748085
Target:  5'- gUCGGCCguggUCGACuGC-AGGACGGGGa -3'
miRNA:   3'- -GGCUGGa---GGCUGcUGuUCCUGUUCCg -5'
31784 5' -54 NC_006938.1 + 28336 0.68 0.768233
Target:  5'- gCGACCagcaagUCCGGgGcCAAGGugAuGGCu -3'
miRNA:   3'- gGCUGG------AGGCUgCuGUUCCugUuCCG- -5'
31784 5' -54 NC_006938.1 + 36718 0.68 0.768233
Target:  5'- uCCGuCCgcucgUCGACGACAucGGCAAccGGCu -3'
miRNA:   3'- -GGCuGGa----GGCUGCUGUucCUGUU--CCG- -5'
31784 5' -54 NC_006938.1 + 3686 0.67 0.775162
Target:  5'- -aGAUgCUCCGugaGCGACGGugcgcguucauccuGGACGAGGCc -3'
miRNA:   3'- ggCUG-GAGGC---UGCUGUU--------------CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 17241 0.67 0.777129
Target:  5'- gCGAUCUCCaGGuccugucCGGCGAGGACcuuGGUg -3'
miRNA:   3'- gGCUGGAGG-CU-------GCUGUUCCUGuu-CCG- -5'
31784 5' -54 NC_006938.1 + 46495 0.67 0.77811
Target:  5'- -gGAgCUgaUCGGCGGC-GGGAUAGGGCc -3'
miRNA:   3'- ggCUgGA--GGCUGCUGuUCCUGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.