miRNA display CGI


Results 21 - 40 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 37144 0.71 0.556392
Target:  5'- -gGGCCUCUGGucccacggUGACAGGGGCcGGGUc -3'
miRNA:   3'- ggCUGGAGGCU--------GCUGUUCCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 37521 0.71 0.567004
Target:  5'- -aGGCCgccgCCGcUGGCAAgcuGGACGAGGCc -3'
miRNA:   3'- ggCUGGa---GGCuGCUGUU---CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 50509 0.71 0.567004
Target:  5'- gCCGcGCCUCCGAUaagccCAAGGGCAGaGCg -3'
miRNA:   3'- -GGC-UGGAGGCUGcu---GUUCCUGUUcCG- -5'
31784 5' -54 NC_006938.1 + 45784 0.71 0.577667
Target:  5'- aCGAUUcgCCGGCaACAAGGcCGAGGCc -3'
miRNA:   3'- gGCUGGa-GGCUGcUGUUCCuGUUCCG- -5'
31784 5' -54 NC_006938.1 + 5222 0.71 0.588373
Target:  5'- cCCG-UCUCCGAagaGACAGGGuccuGGGCc -3'
miRNA:   3'- -GGCuGGAGGCUg--CUGUUCCugu-UCCG- -5'
31784 5' -54 NC_006938.1 + 60130 0.71 0.599115
Target:  5'- gUGAUCUCCGcuaGACAgguGGGcGCGGGGCa -3'
miRNA:   3'- gGCUGGAGGCug-CUGU---UCC-UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 1433 0.7 0.62067
Target:  5'- cCCGAgcUCUCUGGCGACGGcGGccuugcugcCAAGGCg -3'
miRNA:   3'- -GGCU--GGAGGCUGCUGUU-CCu--------GUUCCG- -5'
31784 5' -54 NC_006938.1 + 34337 0.7 0.62067
Target:  5'- uUGACCUCCGccuCGcCGAGGAUGAGcacGCg -3'
miRNA:   3'- gGCUGGAGGCu--GCuGUUCCUGUUC---CG- -5'
31784 5' -54 NC_006938.1 + 19641 0.7 0.631467
Target:  5'- aCGGCCUCCaGCaGAaggcCAAGGACuucGGCg -3'
miRNA:   3'- gGCUGGAGGcUG-CU----GUUCCUGuu-CCG- -5'
31784 5' -54 NC_006938.1 + 33736 0.7 0.642264
Target:  5'- aCCGACgUCCGGCauGCAgcAGGAC--GGCa -3'
miRNA:   3'- -GGCUGgAGGCUGc-UGU--UCCUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 31656 0.7 0.642264
Target:  5'- -aGGCgCUuuGACGAC-AGGGCGGcGGCc -3'
miRNA:   3'- ggCUG-GAggCUGCUGuUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 11269 0.7 0.653053
Target:  5'- -aGGCCU-CGGCGuCGAGGAgGAuGGCg -3'
miRNA:   3'- ggCUGGAgGCUGCuGUUCCUgUU-CCG- -5'
31784 5' -54 NC_006938.1 + 12905 0.7 0.653053
Target:  5'- cCCG-CCUCCuugggcuCGACAAGGACAccuucaAGaGCg -3'
miRNA:   3'- -GGCuGGAGGcu-----GCUGUUCCUGU------UC-CG- -5'
31784 5' -54 NC_006938.1 + 50951 0.7 0.663823
Target:  5'- aCGACCgucCCGACGAUc--GGCcAGGCg -3'
miRNA:   3'- gGCUGGa--GGCUGCUGuucCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 2733 0.69 0.674564
Target:  5'- aCGACCacUCCGcCGcCAuccuGGACGGGGUc -3'
miRNA:   3'- gGCUGG--AGGCuGCuGUu---CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 48344 0.69 0.685267
Target:  5'- cCCGGC-UCgGGCGGCGGuGACGAGcGCg -3'
miRNA:   3'- -GGCUGgAGgCUGCUGUUcCUGUUC-CG- -5'
31784 5' -54 NC_006938.1 + 46968 0.69 0.695921
Target:  5'- gCCGACCgCCGACGAgu-GGGCGc-GCg -3'
miRNA:   3'- -GGCUGGaGGCUGCUguuCCUGUucCG- -5'
31784 5' -54 NC_006938.1 + 50130 0.69 0.706515
Target:  5'- uUCGcACCUUCGAUGGaGAGGGCGAGa- -3'
miRNA:   3'- -GGC-UGGAGGCUGCUgUUCCUGUUCcg -5'
31784 5' -54 NC_006938.1 + 25761 0.69 0.706515
Target:  5'- aUGugCUCCGugGugGucuGGGccaccuccccgaGCGAGGCc -3'
miRNA:   3'- gGCugGAGGCugCugU---UCC------------UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 22421 0.69 0.715991
Target:  5'- aCGGCC-CUGgucaugcGCGGCAAGGA--GGGCa -3'
miRNA:   3'- gGCUGGaGGC-------UGCUGUUCCUguUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.