miRNA display CGI


Results 21 - 40 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 11564 0.66 0.83396
Target:  5'- gUCGugUucgUCgGGCGGCAGGuGGCgGAGGCc -3'
miRNA:   3'- -GGCugG---AGgCUGCUGUUC-CUG-UUCCG- -5'
31784 5' -54 NC_006938.1 + 12905 0.7 0.653053
Target:  5'- cCCG-CCUCCuugggcuCGACAAGGACAccuucaAGaGCg -3'
miRNA:   3'- -GGCuGGAGGcu-----GCUGUUCCUGU------UC-CG- -5'
31784 5' -54 NC_006938.1 + 13182 0.66 0.851042
Target:  5'- cCCGGCaccaCCGG-GAguGGGACAGGcGCg -3'
miRNA:   3'- -GGCUGga--GGCUgCUguUCCUGUUC-CG- -5'
31784 5' -54 NC_006938.1 + 14621 0.66 0.859256
Target:  5'- gCUGGCUgCCGACGGucGGGAaccuCGAGGUc -3'
miRNA:   3'- -GGCUGGaGGCUGCUguUCCU----GUUCCG- -5'
31784 5' -54 NC_006938.1 + 15186 0.68 0.726443
Target:  5'- cCUGACUcCCGgagguacGCGAgAccucGGGGCAGGGCg -3'
miRNA:   3'- -GGCUGGaGGC-------UGCUgU----UCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 16079 0.66 0.867241
Target:  5'- aUGGCC-CCaaccACGACGAGGucugagcgucuCAAGGCg -3'
miRNA:   3'- gGCUGGaGGc---UGCUGUUCCu----------GUUCCG- -5'
31784 5' -54 NC_006938.1 + 17241 0.67 0.777129
Target:  5'- gCGAUCUCCaGGuccugucCGGCGAGGACcuuGGUg -3'
miRNA:   3'- gGCUGGAGG-CU-------GCUGUUCCUGuu-CCG- -5'
31784 5' -54 NC_006938.1 + 17553 0.66 0.851042
Target:  5'- gCGACaugagaaCGGCGACAAccuGGACGcGGCc -3'
miRNA:   3'- gGCUGgag----GCUGCUGUU---CCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 17644 0.67 0.77811
Target:  5'- gCCaACCUCgGcuACGACcuGGACuGGGCc -3'
miRNA:   3'- -GGcUGGAGgC--UGCUGuuCCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 17767 0.67 0.816061
Target:  5'- cUCGA-CUCCGuCGcCGGGGACu-GGCu -3'
miRNA:   3'- -GGCUgGAGGCuGCuGUUCCUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 18015 0.68 0.737835
Target:  5'- -gGAgCUCCagGAUccuCAGGGGCAGGGCg -3'
miRNA:   3'- ggCUgGAGG--CUGcu-GUUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 18040 0.66 0.859256
Target:  5'- gCGGCgUCaagGuCGACGAGGACc-GGCu -3'
miRNA:   3'- gGCUGgAGg--CuGCUGUUCCUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 18216 0.66 0.867241
Target:  5'- gCCGAUgacgCUGugGACAAGcacuucaucGCGAGGCa -3'
miRNA:   3'- -GGCUGga--GGCugCUGUUCc--------UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 18364 0.67 0.816061
Target:  5'- aCUGcuCCUUcaaccagauggCGGCgGACAAGGACAAcGGCa -3'
miRNA:   3'- -GGCu-GGAG-----------GCUG-CUGUUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 18464 0.68 0.748085
Target:  5'- gCaGCCgUCCcGCGACGAGGACAucGCc -3'
miRNA:   3'- gGcUGG-AGGcUGCUGUUCCUGUucCG- -5'
31784 5' -54 NC_006938.1 + 18511 0.67 0.797418
Target:  5'- aCCGGCCg--GACGACGGuGGCcucuGGGCg -3'
miRNA:   3'- -GGCUGGaggCUGCUGUUcCUGu---UCCG- -5'
31784 5' -54 NC_006938.1 + 19049 0.68 0.737835
Target:  5'- gCGGCCauggUCG-CGGC--GGACGAGGCg -3'
miRNA:   3'- gGCUGGa---GGCuGCUGuuCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 19641 0.7 0.631467
Target:  5'- aCGGCCUCCaGCaGAaggcCAAGGACuucGGCg -3'
miRNA:   3'- gGCUGGAGGcUG-CU----GUUCCUGuu-CCG- -5'
31784 5' -54 NC_006938.1 + 19926 0.74 0.407452
Target:  5'- aCGGCUUCCccgucGGCGugGAGGACuccaggGAGGCc -3'
miRNA:   3'- gGCUGGAGG-----CUGCugUUCCUG------UUCCG- -5'
31784 5' -54 NC_006938.1 + 20129 0.81 0.153435
Target:  5'- -gGGCCUCCGACaaccaGCGcuGGGACGAGGCg -3'
miRNA:   3'- ggCUGGAGGCUGc----UGU--UCCUGUUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.