Results 21 - 40 of 112 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31784 | 5' | -54 | NC_006938.1 | + | 37778 | 0.66 | 0.842607 |
Target: 5'- gCCGAucgcaUCUUCGAgGuccGCGAGGACGAcGGUg -3' miRNA: 3'- -GGCU-----GGAGGCUgC---UGUUCCUGUU-CCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 10640 | 0.66 | 0.87037 |
Target: 5'- aUGACCUacguccccgCCGAguaugugacggaggaCGGCAAGGugGucgaGGGCg -3' miRNA: 3'- gGCUGGA---------GGCU---------------GCUGUUCCugU----UCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 51556 | 0.66 | 0.859256 |
Target: 5'- cCCGGC-UCCGgccGCGACGAGGAuguCGAaGCc -3' miRNA: 3'- -GGCUGgAGGC---UGCUGUUCCU---GUUcCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 55819 | 0.66 | 0.867241 |
Target: 5'- gUCGGCCggUCCaGCcccgAAGGACAGGGCc -3' miRNA: 3'- -GGCUGG--AGGcUGcug-UUCCUGUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 30014 | 0.66 | 0.867241 |
Target: 5'- gUCGucCCUCCGGCGAUAccgcugucugucAGcGgGAGGCg -3' miRNA: 3'- -GGCu-GGAGGCUGCUGU------------UCcUgUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 47491 | 0.66 | 0.842607 |
Target: 5'- aUCGGgUUCCGcGCGACGAGuGugA-GGCu -3' miRNA: 3'- -GGCUgGAGGC-UGCUGUUC-CugUuCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 24637 | 0.66 | 0.839173 |
Target: 5'- aCGACC-CCGgccACGGCAugaaguucaagauGGACcGGGCc -3' miRNA: 3'- gGCUGGaGGC---UGCUGUu------------CCUGuUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 21380 | 0.66 | 0.841752 |
Target: 5'- gCUGGCCgagCCGGuccgggUGACAAgccccucGGAgGAGGCg -3' miRNA: 3'- -GGCUGGa--GGCU------GCUGUU-------CCUgUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 52557 | 0.66 | 0.83396 |
Target: 5'- aUGGCgUUCGACGA----GACAAGGCu -3' miRNA: 3'- gGCUGgAGGCUGCUguucCUGUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 11564 | 0.66 | 0.83396 |
Target: 5'- gUCGugUucgUCgGGCGGCAGGuGGCgGAGGCc -3' miRNA: 3'- -GGCugG---AGgCUGCUGUUC-CUG-UUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 21694 | 0.66 | 0.83396 |
Target: 5'- cCCGGCuCUCUgagauaGACGACcuGGACcagcacgggGAGGUg -3' miRNA: 3'- -GGCUG-GAGG------CUGCUGuuCCUG---------UUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 18511 | 0.67 | 0.797418 |
Target: 5'- aCCGGCCg--GACGACGGuGGCcucuGGGCg -3' miRNA: 3'- -GGCUGGaggCUGCUGUUcCUGu---UCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 18364 | 0.67 | 0.816061 |
Target: 5'- aCUGcuCCUUcaaccagauggCGGCgGACAAGGACAAcGGCa -3' miRNA: 3'- -GGCu-GGAG-----------GCUG-CUGUUCCUGUU-CCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 3520 | 0.67 | 0.825108 |
Target: 5'- gCGGCCUgguaccaCGGCGGCAAGGcCGGGa- -3' miRNA: 3'- gGCUGGAg------GCUGCUGUUCCuGUUCcg -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 33381 | 0.67 | 0.816061 |
Target: 5'- gCCGGuCC-CaacaggGACGACAAGGGCAccauccuuGGCa -3' miRNA: 3'- -GGCU-GGaGg-----CUGCUGUUCCUGUu-------CCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 40469 | 0.67 | 0.816061 |
Target: 5'- aCGAcacuCCUCCGACGgACGAc--CAGGGCc -3' miRNA: 3'- gGCU----GGAGGCUGC-UGUUccuGUUCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 20681 | 0.67 | 0.825108 |
Target: 5'- gCCG-CCgCCGugGugagaacCAGGGACA-GGCc -3' miRNA: 3'- -GGCuGGaGGCugCu------GUUCCUGUuCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 28664 | 0.67 | 0.825108 |
Target: 5'- -gGAgCUCCGucGCGGCuGGGAgUggGGCu -3' miRNA: 3'- ggCUgGAGGC--UGCUGuUCCU-GuuCCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 55531 | 0.67 | 0.825108 |
Target: 5'- gCGACCucUCCGucuCGGCGucGACGuauGGCa -3' miRNA: 3'- gGCUGG--AGGCu--GCUGUucCUGUu--CCG- -5' |
|||||||
31784 | 5' | -54 | NC_006938.1 | + | 17644 | 0.67 | 0.77811 |
Target: 5'- gCCaACCUCgGcuACGACcuGGACuGGGCc -3' miRNA: 3'- -GGcUGGAGgC--UGCUGuuCCUGuUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home