miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 20681 0.67 0.825108
Target:  5'- gCCG-CCgCCGugGugagaacCAGGGACA-GGCc -3'
miRNA:   3'- -GGCuGGaGGCugCu------GUUCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 20728 0.66 0.862478
Target:  5'- cUCGACCggaggcaggugucgCUGAUGGaggcGGACAAGGUg -3'
miRNA:   3'- -GGCUGGa-------------GGCUGCUguu-CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 21380 0.66 0.841752
Target:  5'- gCUGGCCgagCCGGuccgggUGACAAgccccucGGAgGAGGCg -3'
miRNA:   3'- -GGCUGGa--GGCU------GCUGUU-------CCUgUUCCG- -5'
31784 5' -54 NC_006938.1 + 21694 0.66 0.83396
Target:  5'- cCCGGCuCUCUgagauaGACGACcuGGACcagcacgggGAGGUg -3'
miRNA:   3'- -GGCUG-GAGG------CUGCUGuuCCUG---------UUCCG- -5'
31784 5' -54 NC_006938.1 + 22421 0.69 0.715991
Target:  5'- aCGGCC-CUGgucaugcGCGGCAAGGA--GGGCa -3'
miRNA:   3'- gGCUGGaGGC-------UGCUGUUCCUguUCCG- -5'
31784 5' -54 NC_006938.1 + 22547 0.8 0.202309
Target:  5'- gCCcACCUCCG-CGACAAGGugcugguccacgccaACGAGGCa -3'
miRNA:   3'- -GGcUGGAGGCuGCUGUUCC---------------UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 23042 0.69 0.71704
Target:  5'- uCUGGCaCUCCuACGuCAAGGACAugcAGGa -3'
miRNA:   3'- -GGCUG-GAGGcUGCuGUUCCUGU---UCCg -5'
31784 5' -54 NC_006938.1 + 24637 0.66 0.839173
Target:  5'- aCGACC-CCGgccACGGCAugaaguucaagauGGACcGGGCc -3'
miRNA:   3'- gGCUGGaGGC---UGCUGUu------------CCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 24758 0.68 0.748085
Target:  5'- -gGGCUUCCGGCccaGCAagaAGGGCGcGGCg -3'
miRNA:   3'- ggCUGGAGGCUGc--UGU---UCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 25497 0.68 0.748085
Target:  5'- gCGACCg-CGACGGCAacauccgcaaGGGugGcuggaAGGCa -3'
miRNA:   3'- gGCUGGagGCUGCUGU----------UCCugU-----UCCG- -5'
31784 5' -54 NC_006938.1 + 25761 0.69 0.706515
Target:  5'- aUGugCUCCGugGugGucuGGGccaccuccccgaGCGAGGCc -3'
miRNA:   3'- gGCugGAGGCugCugU---UCC------------UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 26563 0.66 0.842607
Target:  5'- aCG-CCaCCGA-GGCGAaccuGGACAAGGCc -3'
miRNA:   3'- gGCuGGaGGCUgCUGUU----CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 27532 0.67 0.797418
Target:  5'- cUCGGCCgcUCCGcCG-CAgaaGGGACAuGGCu -3'
miRNA:   3'- -GGCUGG--AGGCuGCuGU---UCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 28336 0.68 0.768233
Target:  5'- gCGACCagcaagUCCGGgGcCAAGGugAuGGCu -3'
miRNA:   3'- gGCUGG------AGGCUgCuGUUCCugUuCCG- -5'
31784 5' -54 NC_006938.1 + 28664 0.67 0.825108
Target:  5'- -gGAgCUCCGucGCGGCuGGGAgUggGGCu -3'
miRNA:   3'- ggCUgGAGGC--UGCUGuUCCU-GuuCCG- -5'
31784 5' -54 NC_006938.1 + 29412 0.67 0.825108
Target:  5'- aCUGAUCaaguUCaUGAcCGACGAGGACAuucgccaaGGGCg -3'
miRNA:   3'- -GGCUGG----AG-GCU-GCUGUUCCUGU--------UCCG- -5'
31784 5' -54 NC_006938.1 + 30014 0.66 0.867241
Target:  5'- gUCGucCCUCCGGCGAUAccgcugucugucAGcGgGAGGCg -3'
miRNA:   3'- -GGCu-GGAGGCUGCUGU------------UCcUgUUCCG- -5'
31784 5' -54 NC_006938.1 + 31036 0.72 0.494172
Target:  5'- uCUGGCCg-CGugGAgAAGGGCGAcGGCu -3'
miRNA:   3'- -GGCUGGagGCugCUgUUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 31656 0.7 0.642264
Target:  5'- -aGGCgCUuuGACGAC-AGGGCGGcGGCc -3'
miRNA:   3'- ggCUG-GAggCUGCUGuUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 32191 0.75 0.372083
Target:  5'- uCCuGCCUCCGAUGGCGAGGu--GGGa -3'
miRNA:   3'- -GGcUGGAGGCUGCUGUUCCuguUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.