miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 48344 0.69 0.685267
Target:  5'- cCCGGC-UCgGGCGGCGGuGACGAGcGCg -3'
miRNA:   3'- -GGCUGgAGgCUGCUGUUcCUGUUC-CG- -5'
31784 5' -54 NC_006938.1 + 48033 0.74 0.416617
Target:  5'- -aGACCUCgGGCGGCGcGGAC--GGCa -3'
miRNA:   3'- ggCUGGAGgCUGCUGUuCCUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 47950 0.68 0.748085
Target:  5'- gUCGGCCguggUCGACuGC-AGGACGGGGa -3'
miRNA:   3'- -GGCUGGa---GGCUGcUGuUCCUGUUCCg -5'
31784 5' -54 NC_006938.1 + 47604 0.66 0.842607
Target:  5'- aCCGGCgUCaCGGCGACc-GGAUAcacgcucGGCa -3'
miRNA:   3'- -GGCUGgAG-GCUGCUGuuCCUGUu------CCG- -5'
31784 5' -54 NC_006938.1 + 47491 0.66 0.842607
Target:  5'- aUCGGgUUCCGcGCGACGAGuGugA-GGCu -3'
miRNA:   3'- -GGCUgGAGGC-UGCUGUUC-CugUuCCG- -5'
31784 5' -54 NC_006938.1 + 46968 0.69 0.695921
Target:  5'- gCCGACCgCCGACGAgu-GGGCGc-GCg -3'
miRNA:   3'- -GGCUGGaGGCUGCUguuCCUGUucCG- -5'
31784 5' -54 NC_006938.1 + 46685 0.68 0.737835
Target:  5'- aCgGACCUCCucguCGGCAgcugGGGagcGCGGGGCc -3'
miRNA:   3'- -GgCUGGAGGcu--GCUGU----UCC---UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 46495 0.67 0.77811
Target:  5'- -gGAgCUgaUCGGCGGC-GGGAUAGGGCc -3'
miRNA:   3'- ggCUgGA--GGCUGCUGuUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 46305 0.66 0.867241
Target:  5'- -gGACCcCaCGAuCGAucCAAGuGGCAGGGCg -3'
miRNA:   3'- ggCUGGaG-GCU-GCU--GUUC-CUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 45990 0.75 0.363573
Target:  5'- uCCGAUCaggaccucgaagUCCGcCGucaGCGAGGACAGGGCc -3'
miRNA:   3'- -GGCUGG------------AGGCuGC---UGUUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 45784 0.71 0.577667
Target:  5'- aCGAUUcgCCGGCaACAAGGcCGAGGCc -3'
miRNA:   3'- gGCUGGa-GGCUGcUGUUCCuGUUCCG- -5'
31784 5' -54 NC_006938.1 + 45157 0.66 0.851042
Target:  5'- uCUGACUUCUGcgacCGACAuuGuCGAGGCa -3'
miRNA:   3'- -GGCUGGAGGCu---GCUGUucCuGUUCCG- -5'
31784 5' -54 NC_006938.1 + 43422 0.66 0.851042
Target:  5'- -aGGCCUccCCGugGgagGCGGGGACAuacgcggucGGCg -3'
miRNA:   3'- ggCUGGA--GGCugC---UGUUCCUGUu--------CCG- -5'
31784 5' -54 NC_006938.1 + 43054 0.67 0.816061
Target:  5'- cCCGuuugaCUCCGACGAgAcgaccGGGACGAG-Cu -3'
miRNA:   3'- -GGCug---GAGGCUGCUgU-----UCCUGUUCcG- -5'
31784 5' -54 NC_006938.1 + 41687 0.67 0.797418
Target:  5'- cCUGGCCgugCCGACGuugauCcGGGGCA-GGUu -3'
miRNA:   3'- -GGCUGGa--GGCUGCu----GuUCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 40864 0.66 0.867241
Target:  5'- aCGACCUCgGAgGACGuuGuCAcGGCc -3'
miRNA:   3'- gGCUGGAGgCUgCUGUucCuGUuCCG- -5'
31784 5' -54 NC_006938.1 + 40516 0.82 0.149346
Target:  5'- uCCGAUC-CgGACGACGAGGACGucGGCg -3'
miRNA:   3'- -GGCUGGaGgCUGCUGUUCCUGUu-CCG- -5'
31784 5' -54 NC_006938.1 + 40469 0.67 0.816061
Target:  5'- aCGAcacuCCUCCGACGgACGAc--CAGGGCc -3'
miRNA:   3'- gGCU----GGAGGCUGC-UGUUccuGUUCCG- -5'
31784 5' -54 NC_006938.1 + 39576 0.73 0.4545
Target:  5'- aCCGAgCUUCCGACGACGAuuugucuuGAC-AGGCu -3'
miRNA:   3'- -GGCU-GGAGGCUGCUGUUc-------CUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 37778 0.66 0.842607
Target:  5'- gCCGAucgcaUCUUCGAgGuccGCGAGGACGAcGGUg -3'
miRNA:   3'- -GGCU-----GGAGGCUgC---UGUUCCUGUU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.