miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 60249 0.66 0.842607
Target:  5'- aCCGG-CUCCGGCGACAAuGGuCGucuGCc -3'
miRNA:   3'- -GGCUgGAGGCUGCUGUU-CCuGUuc-CG- -5'
31784 5' -54 NC_006938.1 + 60130 0.71 0.599115
Target:  5'- gUGAUCUCCGcuaGACAgguGGGcGCGGGGCa -3'
miRNA:   3'- gGCUGGAGGCug-CUGU---UCC-UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 59247 0.67 0.825108
Target:  5'- gUGAaggucUCUCCGGCuGCcAGGACAGGcGCg -3'
miRNA:   3'- gGCU-----GGAGGCUGcUGuUCCUGUUC-CG- -5'
31784 5' -54 NC_006938.1 + 57957 0.73 0.444852
Target:  5'- uCUGGCUUCCagGACGGguGGGACGGcGGCu -3'
miRNA:   3'- -GGCUGGAGG--CUGCUguUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 56066 0.67 0.825108
Target:  5'- -aGAUCUCCGcCGugAuguucGGGACAcGGUu -3'
miRNA:   3'- ggCUGGAGGCuGCugU-----UCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 55819 0.66 0.867241
Target:  5'- gUCGGCCggUCCaGCcccgAAGGACAGGGCc -3'
miRNA:   3'- -GGCUGG--AGGcUGcug-UUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 55648 0.68 0.748085
Target:  5'- -aGACCagCGgagGCGGCAAGGGCGgccugggaggaGGGCc -3'
miRNA:   3'- ggCUGGagGC---UGCUGUUCCUGU-----------UCCG- -5'
31784 5' -54 NC_006938.1 + 55531 0.67 0.825108
Target:  5'- gCGACCucUCCGucuCGGCGucGACGuauGGCa -3'
miRNA:   3'- gGCUGG--AGGCu--GCUGUucCUGUu--CCG- -5'
31784 5' -54 NC_006938.1 + 53367 0.73 0.4545
Target:  5'- aCCGGCCucUCCGuuGACAAccuGGACGuccuGGGCu -3'
miRNA:   3'- -GGCUGG--AGGCugCUGUU---CCUGU----UCCG- -5'
31784 5' -54 NC_006938.1 + 53233 0.68 0.737835
Target:  5'- uCgGAUCUCC-ACGAUggGGAUGuucGGCg -3'
miRNA:   3'- -GgCUGGAGGcUGCUGuuCCUGUu--CCG- -5'
31784 5' -54 NC_006938.1 + 52557 0.66 0.83396
Target:  5'- aUGGCgUUCGACGA----GACAAGGCu -3'
miRNA:   3'- gGCUGgAGGCUGCUguucCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 52305 0.67 0.797418
Target:  5'- cUCGAuCCUCauCGGCGGCcAGGGC--GGCa -3'
miRNA:   3'- -GGCU-GGAG--GCUGCUGuUCCUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 52202 0.68 0.737835
Target:  5'- gUGGCauCUUCGGCGGCcuguuuGGugGAGGCg -3'
miRNA:   3'- gGCUG--GAGGCUGCUGuu----CCugUUCCG- -5'
31784 5' -54 NC_006938.1 + 51962 0.66 0.859256
Target:  5'- cCCGAUCUgCCgcgaagGACGugGAGGACcucGCa -3'
miRNA:   3'- -GGCUGGA-GG------CUGCugUUCCUGuucCG- -5'
31784 5' -54 NC_006938.1 + 51556 0.66 0.859256
Target:  5'- cCCGGC-UCCGgccGCGACGAGGAuguCGAaGCc -3'
miRNA:   3'- -GGCUGgAGGC---UGCUGUUCCU---GUUcCG- -5'
31784 5' -54 NC_006938.1 + 50951 0.7 0.663823
Target:  5'- aCGACCgucCCGACGAUc--GGCcAGGCg -3'
miRNA:   3'- gGCUGGa--GGCUGCUGuucCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 50509 0.71 0.567004
Target:  5'- gCCGcGCCUCCGAUaagccCAAGGGCAGaGCg -3'
miRNA:   3'- -GGC-UGGAGGCUGcu---GUUCCUGUUcCG- -5'
31784 5' -54 NC_006938.1 + 50130 0.69 0.706515
Target:  5'- uUCGcACCUUCGAUGGaGAGGGCGAGa- -3'
miRNA:   3'- -GGC-UGGAGGCUGCUgUUCCUGUUCcg -5'
31784 5' -54 NC_006938.1 + 50069 0.68 0.727483
Target:  5'- aCCGAgCgcggCCGGaguCGACAGGaGugGAGGUc -3'
miRNA:   3'- -GGCUgGa---GGCU---GCUGUUC-CugUUCCG- -5'
31784 5' -54 NC_006938.1 + 48789 0.74 0.43532
Target:  5'- gUCGACUcaaCGugGAgcAGGACGAGGCa -3'
miRNA:   3'- -GGCUGGag-GCugCUguUCCUGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.