miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 33736 0.7 0.642264
Target:  5'- aCCGACgUCCGGCauGCAgcAGGAC--GGCa -3'
miRNA:   3'- -GGCUGgAGGCUGc-UGU--UCCUGuuCCG- -5'
31784 5' -54 NC_006938.1 + 53367 0.73 0.4545
Target:  5'- aCCGGCCucUCCGuuGACAAccuGGACGuccuGGGCu -3'
miRNA:   3'- -GGCUGG--AGGCugCUGUU---CCUGU----UCCG- -5'
31784 5' -54 NC_006938.1 + 31036 0.72 0.494172
Target:  5'- uCUGGCCg-CGugGAgAAGGGCGAcGGCu -3'
miRNA:   3'- -GGCUGGagGCugCUgUUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 33018 0.71 0.556392
Target:  5'- uCUGACUUCCagGACaGCGAGGGCA-GGUg -3'
miRNA:   3'- -GGCUGGAGG--CUGcUGUUCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 37521 0.71 0.567004
Target:  5'- -aGGCCgccgCCGcUGGCAAgcuGGACGAGGCc -3'
miRNA:   3'- ggCUGGa---GGCuGCUGUU---CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 45784 0.71 0.577667
Target:  5'- aCGAUUcgCCGGCaACAAGGcCGAGGCc -3'
miRNA:   3'- gGCUGGa-GGCUGcUGUUCCuGUUCCG- -5'
31784 5' -54 NC_006938.1 + 60130 0.71 0.599115
Target:  5'- gUGAUCUCCGcuaGACAgguGGGcGCGGGGCa -3'
miRNA:   3'- gGCUGGAGGCug-CUGU---UCC-UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 19641 0.7 0.631467
Target:  5'- aCGGCCUCCaGCaGAaggcCAAGGACuucGGCg -3'
miRNA:   3'- gGCUGGAGGcUG-CU----GUUCCUGuu-CCG- -5'
31784 5' -54 NC_006938.1 + 31656 0.7 0.642264
Target:  5'- -aGGCgCUuuGACGAC-AGGGCGGcGGCc -3'
miRNA:   3'- ggCUG-GAggCUGCUGuUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 57957 0.73 0.444852
Target:  5'- uCUGGCUUCCagGACGGguGGGACGGcGGCu -3'
miRNA:   3'- -GGCUGGAGG--CUGCUguUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 48789 0.74 0.43532
Target:  5'- gUCGACUcaaCGugGAgcAGGACGAGGCa -3'
miRNA:   3'- -GGCUGGag-GCugCUguUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 7537 0.74 0.425908
Target:  5'- uCCGGCuCUUCGGCuacGCGGGGAC-GGGCa -3'
miRNA:   3'- -GGCUG-GAGGCUGc--UGUUCCUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 40516 0.82 0.149346
Target:  5'- uCCGAUC-CgGACGACGAGGACGucGGCg -3'
miRNA:   3'- -GGCUGGaGgCUGCUGUUCCUGUu-CCG- -5'
31784 5' -54 NC_006938.1 + 20129 0.81 0.153435
Target:  5'- -gGGCCUCCGACaaccaGCGcuGGGACGAGGCg -3'
miRNA:   3'- ggCUGGAGGCUGc----UGU--UCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 22547 0.8 0.202309
Target:  5'- gCCcACCUCCG-CGACAAGGugcugguccacgccaACGAGGCa -3'
miRNA:   3'- -GGcUGGAGGCuGCUGUUCC---------------UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 6807 0.75 0.372083
Target:  5'- gCCGACCUguccaCGGuCGACAAGGcCGAGGg -3'
miRNA:   3'- -GGCUGGAg----GCU-GCUGUUCCuGUUCCg -5'
31784 5' -54 NC_006938.1 + 10388 0.75 0.372083
Target:  5'- uCCGAUga-CGACGACcagucgaacaucGAGGGCGAGGCg -3'
miRNA:   3'- -GGCUGgagGCUGCUG------------UUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 19926 0.74 0.407452
Target:  5'- aCGGCUUCCccgucGGCGugGAGGACuccaggGAGGCc -3'
miRNA:   3'- gGCUGGAGG-----CUGCugUUCCUG------UUCCG- -5'
31784 5' -54 NC_006938.1 + 2646 0.74 0.415695
Target:  5'- gCGGCCUCCacGGCGACGAGGGuccgaacggaagcCGGGGa -3'
miRNA:   3'- gGCUGGAGG--CUGCUGUUCCU-------------GUUCCg -5'
31784 5' -54 NC_006938.1 + 48033 0.74 0.416617
Target:  5'- -aGACCUCgGGCGGCGcGGAC--GGCa -3'
miRNA:   3'- ggCUGGAGgCUGCUGUuCCUGuuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.