miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 30014 0.66 0.867241
Target:  5'- gUCGucCCUCCGGCGAUAccgcugucugucAGcGgGAGGCg -3'
miRNA:   3'- -GGCu-GGAGGCUGCUGU------------UCcUgUUCCG- -5'
31784 5' -54 NC_006938.1 + 34677 0.68 0.727483
Target:  5'- gUCGGCgUCCGuCGGCAGGucgaGCcGGGCa -3'
miRNA:   3'- -GGCUGgAGGCuGCUGUUCc---UGuUCCG- -5'
31784 5' -54 NC_006938.1 + 15186 0.68 0.726443
Target:  5'- cCUGACUcCCGgagguacGCGAgAccucGGGGCAGGGCg -3'
miRNA:   3'- -GGCUGGaGGC-------UGCUgU----UCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 10741 0.76 0.315395
Target:  5'- gCCGuCCUCCGucacauacuCGGCGGGGACGuAGGUc -3'
miRNA:   3'- -GGCuGGAGGCu--------GCUGUUCCUGU-UCCG- -5'
31784 5' -54 NC_006938.1 + 60249 0.66 0.842607
Target:  5'- aCCGG-CUCCGGCGACAAuGGuCGucuGCc -3'
miRNA:   3'- -GGCUgGAGGCUGCUGUU-CCuGUuc-CG- -5'
31784 5' -54 NC_006938.1 + 59247 0.67 0.825108
Target:  5'- gUGAaggucUCUCCGGCuGCcAGGACAGGcGCg -3'
miRNA:   3'- gGCU-----GGAGGCUGcUGuUCCUGUUC-CG- -5'
31784 5' -54 NC_006938.1 + 6898 0.67 0.816061
Target:  5'- cUCGGCCUugucgaCCGugGACAGGucGGCcuuGGCc -3'
miRNA:   3'- -GGCUGGA------GGCugCUGUUC--CUGuu-CCG- -5'
31784 5' -54 NC_006938.1 + 37084 0.67 0.797418
Target:  5'- cCUGACCUCgGACaGCAugAGGAUcAGaGCc -3'
miRNA:   3'- -GGCUGGAGgCUGcUGU--UCCUGuUC-CG- -5'
31784 5' -54 NC_006938.1 + 46495 0.67 0.77811
Target:  5'- -gGAgCUgaUCGGCGGC-GGGAUAGGGCc -3'
miRNA:   3'- ggCUgGA--GGCUGCUGuUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 46685 0.68 0.737835
Target:  5'- aCgGACCUCCucguCGGCAgcugGGGagcGCGGGGCc -3'
miRNA:   3'- -GgCUGGAGGcu--GCUGU----UCC---UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 47950 0.68 0.748085
Target:  5'- gUCGGCCguggUCGACuGC-AGGACGGGGa -3'
miRNA:   3'- -GGCUGGa---GGCUGcUGuUCCUGUUCCg -5'
31784 5' -54 NC_006938.1 + 41687 0.67 0.797418
Target:  5'- cCUGGCCgugCCGACGuugauCcGGGGCA-GGUu -3'
miRNA:   3'- -GGCUGGa--GGCUGCu----GuUCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 55819 0.66 0.867241
Target:  5'- gUCGGCCggUCCaGCcccgAAGGACAGGGCc -3'
miRNA:   3'- -GGCUGG--AGGcUGcug-UUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 18015 0.68 0.737835
Target:  5'- -gGAgCUCCagGAUccuCAGGGGCAGGGCg -3'
miRNA:   3'- ggCUgGAGG--CUGcu-GUUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 51556 0.66 0.859256
Target:  5'- cCCGGC-UCCGgccGCGACGAGGAuguCGAaGCc -3'
miRNA:   3'- -GGCUGgAGGC---UGCUGUUCCU---GUUcCG- -5'
31784 5' -54 NC_006938.1 + 27532 0.67 0.797418
Target:  5'- cUCGGCCgcUCCGcCG-CAgaaGGGACAuGGCu -3'
miRNA:   3'- -GGCUGG--AGGCuGCuGU---UCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 53233 0.68 0.737835
Target:  5'- uCgGAUCUCC-ACGAUggGGAUGuucGGCg -3'
miRNA:   3'- -GgCUGGAGGcUGCUGuuCCUGUu--CCG- -5'
31784 5' -54 NC_006938.1 + 50069 0.68 0.727483
Target:  5'- aCCGAgCgcggCCGGaguCGACAGGaGugGAGGUc -3'
miRNA:   3'- -GGCUgGa---GGCU---GCUGUUC-CugUUCCG- -5'
31784 5' -54 NC_006938.1 + 47491 0.66 0.842607
Target:  5'- aUCGGgUUCCGcGCGACGAGuGugA-GGCu -3'
miRNA:   3'- -GGCUgGAGGC-UGCUGUUC-CugUuCCG- -5'
31784 5' -54 NC_006938.1 + 56066 0.67 0.825108
Target:  5'- -aGAUCUCCGcCGugAuguucGGGACAcGGUu -3'
miRNA:   3'- ggCUGGAGGCuGCugU-----UCCUGUuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.