miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 47491 0.66 0.842607
Target:  5'- aUCGGgUUCCGcGCGACGAGuGugA-GGCu -3'
miRNA:   3'- -GGCUgGAGGC-UGCUGUUC-CugUuCCG- -5'
31784 5' -54 NC_006938.1 + 6998 0.74 0.416617
Target:  5'- aCGGCC-CCGGCuggggaGGCAAGGcCGGGGCc -3'
miRNA:   3'- gGCUGGaGGCUG------CUGUUCCuGUUCCG- -5'
31784 5' -54 NC_006938.1 + 34677 0.68 0.727483
Target:  5'- gUCGGCgUCCGuCGGCAGGucgaGCcGGGCa -3'
miRNA:   3'- -GGCUGgAGGCuGCUGUUCc---UGuUCCG- -5'
31784 5' -54 NC_006938.1 + 51556 0.66 0.859256
Target:  5'- cCCGGC-UCCGgccGCGACGAGGAuguCGAaGCc -3'
miRNA:   3'- -GGCUGgAGGC---UGCUGUUCCU---GUUcCG- -5'
31784 5' -54 NC_006938.1 + 5222 0.71 0.588373
Target:  5'- cCCG-UCUCCGAagaGACAGGGuccuGGGCc -3'
miRNA:   3'- -GGCuGGAGGCUg--CUGUUCCugu-UCCG- -5'
31784 5' -54 NC_006938.1 + 32191 0.75 0.372083
Target:  5'- uCCuGCCUCCGAUGGCGAGGu--GGGa -3'
miRNA:   3'- -GGcUGGAGGCUGCUGUUCCuguUCCg -5'
31784 5' -54 NC_006938.1 + 39576 0.73 0.4545
Target:  5'- aCCGAgCUUCCGACGACGAuuugucuuGAC-AGGCu -3'
miRNA:   3'- -GGCU-GGAGGCUGCUGUUc-------CUGuUCCG- -5'
31784 5' -54 NC_006938.1 + 55819 0.66 0.867241
Target:  5'- gUCGGCCggUCCaGCcccgAAGGACAGGGCc -3'
miRNA:   3'- -GGCUGG--AGGcUGcug-UUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 30014 0.66 0.867241
Target:  5'- gUCGucCCUCCGGCGAUAccgcugucugucAGcGgGAGGCg -3'
miRNA:   3'- -GGCu-GGAGGCUGCUGU------------UCcUgUUCCG- -5'
31784 5' -54 NC_006938.1 + 60249 0.66 0.842607
Target:  5'- aCCGG-CUCCGGCGACAAuGGuCGucuGCc -3'
miRNA:   3'- -GGCUgGAGGCUGCUGUU-CCuGUuc-CG- -5'
31784 5' -54 NC_006938.1 + 41687 0.67 0.797418
Target:  5'- cCUGGCCgugCCGACGuugauCcGGGGCA-GGUu -3'
miRNA:   3'- -GGCUGGa--GGCUGCu----GuUCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 19926 0.74 0.407452
Target:  5'- aCGGCUUCCccgucGGCGugGAGGACuccaggGAGGCc -3'
miRNA:   3'- gGCUGGAGG-----CUGCugUUCCUG------UUCCG- -5'
31784 5' -54 NC_006938.1 + 23042 0.69 0.71704
Target:  5'- uCUGGCaCUCCuACGuCAAGGACAugcAGGa -3'
miRNA:   3'- -GGCUG-GAGGcUGCuGUUCCUGU---UCCg -5'
31784 5' -54 NC_006938.1 + 22421 0.69 0.715991
Target:  5'- aCGGCC-CUGgucaugcGCGGCAAGGA--GGGCa -3'
miRNA:   3'- gGCUGGaGGC-------UGCUGUUCCUguUCCG- -5'
31784 5' -54 NC_006938.1 + 25761 0.69 0.706515
Target:  5'- aUGugCUCCGugGugGucuGGGccaccuccccgaGCGAGGCc -3'
miRNA:   3'- gGCugGAGGCugCugU---UCC------------UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 50130 0.69 0.706515
Target:  5'- uUCGcACCUUCGAUGGaGAGGGCGAGa- -3'
miRNA:   3'- -GGC-UGGAGGCUGCUgUUCCUGUUCcg -5'
31784 5' -54 NC_006938.1 + 46968 0.69 0.695921
Target:  5'- gCCGACCgCCGACGAgu-GGGCGc-GCg -3'
miRNA:   3'- -GGCUGGaGGCUGCUguuCCUGUucCG- -5'
31784 5' -54 NC_006938.1 + 53367 0.73 0.4545
Target:  5'- aCCGGCCucUCCGuuGACAAccuGGACGuccuGGGCu -3'
miRNA:   3'- -GGCUGG--AGGCugCUGUU---CCUGU----UCCG- -5'
31784 5' -54 NC_006938.1 + 31036 0.72 0.494172
Target:  5'- uCUGGCCg-CGugGAgAAGGGCGAcGGCu -3'
miRNA:   3'- -GGCUGGagGCugCUgUUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 33018 0.71 0.556392
Target:  5'- uCUGACUUCCagGACaGCGAGGGCA-GGUg -3'
miRNA:   3'- -GGCUGGAGG--CUGcUGUUCCUGUuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.