miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31790 3' -62.3 NC_006938.1 + 27049 0.66 0.412842
Target:  5'- cGCGCCGGGGcaguGCCACacuccggagggaCAGGcccaggucacgggcCGCGCCGg -3'
miRNA:   3'- -UGCGGCUCC----UGGUG------------GUCCu-------------GCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 29306 0.66 0.412842
Target:  5'- gACGCCaccGGGACggagacgacaucaugCGCCGGGugGUGCgCGa -3'
miRNA:   3'- -UGCGGc--UCCUG---------------GUGGUCCugCGCG-GU- -5'
31790 3' -62.3 NC_006938.1 + 31700 0.67 0.358703
Target:  5'- cGCGCaGAccGGCCGCaAGGGCGCGUCAg -3'
miRNA:   3'- -UGCGgCUc-CUGGUGgUCCUGCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 35138 0.67 0.327477
Target:  5'- cAUGCCGAGGuCCA--GGGAgGCGUCc -3'
miRNA:   3'- -UGCGGCUCCuGGUggUCCUgCGCGGu -5'
31790 3' -62.3 NC_006938.1 + 35593 0.66 0.375078
Target:  5'- gGCGUCGAGGAUCuCgAaGAUGCGCUg -3'
miRNA:   3'- -UGCGGCUCCUGGuGgUcCUGCGCGGu -5'
31790 3' -62.3 NC_006938.1 + 35649 0.66 0.400572
Target:  5'- cCGCCGAGGugUggcGCgAGGAgaugcugucCGuCGCCAg -3'
miRNA:   3'- uGCGGCUCCugG---UGgUCCU---------GC-GCGGU- -5'
31790 3' -62.3 NC_006938.1 + 35977 0.66 0.375078
Target:  5'- aACGCCGAGG-CCAUCAcu-CGCaccGCCAu -3'
miRNA:   3'- -UGCGGCUCCuGGUGGUccuGCG---CGGU- -5'
31790 3' -62.3 NC_006938.1 + 37988 0.66 0.409312
Target:  5'- cCGCCGcccugagacgcGGGCCACCAGuGugGgCGCUu -3'
miRNA:   3'- uGCGGCu----------CCUGGUGGUC-CugC-GCGGu -5'
31790 3' -62.3 NC_006938.1 + 41159 0.68 0.305409
Target:  5'- gAUGUCGAGGACCcgGCCAcGGAggaggcgagUGCGCUc -3'
miRNA:   3'- -UGCGGCUCCUGG--UGGU-CCU---------GCGCGGu -5'
31790 3' -62.3 NC_006938.1 + 41482 0.68 0.298311
Target:  5'- uCGUCGGGGACUuugcCCAGGccgccGCGCaGCCGc -3'
miRNA:   3'- uGCGGCUCCUGGu---GGUCC-----UGCG-CGGU- -5'
31790 3' -62.3 NC_006938.1 + 46000 0.66 0.409312
Target:  5'- cCGCCGAGGcuCCgAUCAGGACcucgaagucCGCCGu -3'
miRNA:   3'- uGCGGCUCCu-GG-UGGUCCUGc--------GCGGU- -5'
31790 3' -62.3 NC_006938.1 + 46667 0.66 0.383453
Target:  5'- -aGCUGGGGAgCGCgGGGcCGUGUCGc -3'
miRNA:   3'- ugCGGCUCCUgGUGgUCCuGCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 47791 0.67 0.342834
Target:  5'- cGCGCUGAGGACCuuCAGucCGUuguugGCCGc -3'
miRNA:   3'- -UGCGGCUCCUGGugGUCcuGCG-----CGGU- -5'
31790 3' -62.3 NC_006938.1 + 48456 0.7 0.212104
Target:  5'- gUGCCGAcGGucuCCGaCAGGACGCGCUc -3'
miRNA:   3'- uGCGGCU-CCu--GGUgGUCCUGCGCGGu -5'
31790 3' -62.3 NC_006938.1 + 50923 0.68 0.305409
Target:  5'- -gGCCGAGGGCCuggACCGaGACuuCGCCAc -3'
miRNA:   3'- ugCGGCUCCUGG---UGGUcCUGc-GCGGU- -5'
31790 3' -62.3 NC_006938.1 + 51082 0.69 0.258402
Target:  5'- cGCGCCGAcuGCCugCAGGACGUuguuCCGc -3'
miRNA:   3'- -UGCGGCUccUGGugGUCCUGCGc---GGU- -5'
31790 3' -62.3 NC_006938.1 + 51979 0.66 0.409312
Target:  5'- gACGUgGAGGACCucgcagagACCGuGGACGaGUCAu -3'
miRNA:   3'- -UGCGgCUCCUGG--------UGGU-CCUGCgCGGU- -5'
31790 3' -62.3 NC_006938.1 + 58794 0.68 0.312637
Target:  5'- -gGCCGAGGAuUCACCAau-CGCGUCAc -3'
miRNA:   3'- ugCGGCUCCU-GGUGGUccuGCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 60418 0.69 0.258402
Target:  5'- gGCGCUGAGGGCCGCCGcgcuGACaGUuCCAa -3'
miRNA:   3'- -UGCGGCUCCUGGUGGUc---CUG-CGcGGU- -5'
31790 3' -62.3 NC_006938.1 + 63408 0.68 0.2845
Target:  5'- gACGgCGAGGuCCGCUGGGACuG-GCCGc -3'
miRNA:   3'- -UGCgGCUCCuGGUGGUCCUG-CgCGGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.