Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31790 | 3' | -62.3 | NC_006938.1 | + | 27049 | 0.66 | 0.412842 |
Target: 5'- cGCGCCGGGGcaguGCCACacuccggagggaCAGGcccaggucacgggcCGCGCCGg -3' miRNA: 3'- -UGCGGCUCC----UGGUG------------GUCCu-------------GCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 29306 | 0.66 | 0.412842 |
Target: 5'- gACGCCaccGGGACggagacgacaucaugCGCCGGGugGUGCgCGa -3' miRNA: 3'- -UGCGGc--UCCUG---------------GUGGUCCugCGCG-GU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 31700 | 0.67 | 0.358703 |
Target: 5'- cGCGCaGAccGGCCGCaAGGGCGCGUCAg -3' miRNA: 3'- -UGCGgCUc-CUGGUGgUCCUGCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 35138 | 0.67 | 0.327477 |
Target: 5'- cAUGCCGAGGuCCA--GGGAgGCGUCc -3' miRNA: 3'- -UGCGGCUCCuGGUggUCCUgCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 35593 | 0.66 | 0.375078 |
Target: 5'- gGCGUCGAGGAUCuCgAaGAUGCGCUg -3' miRNA: 3'- -UGCGGCUCCUGGuGgUcCUGCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 35649 | 0.66 | 0.400572 |
Target: 5'- cCGCCGAGGugUggcGCgAGGAgaugcugucCGuCGCCAg -3' miRNA: 3'- uGCGGCUCCugG---UGgUCCU---------GC-GCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 35977 | 0.66 | 0.375078 |
Target: 5'- aACGCCGAGG-CCAUCAcu-CGCaccGCCAu -3' miRNA: 3'- -UGCGGCUCCuGGUGGUccuGCG---CGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 37988 | 0.66 | 0.409312 |
Target: 5'- cCGCCGcccugagacgcGGGCCACCAGuGugGgCGCUu -3' miRNA: 3'- uGCGGCu----------CCUGGUGGUC-CugC-GCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 41159 | 0.68 | 0.305409 |
Target: 5'- gAUGUCGAGGACCcgGCCAcGGAggaggcgagUGCGCUc -3' miRNA: 3'- -UGCGGCUCCUGG--UGGU-CCU---------GCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 41482 | 0.68 | 0.298311 |
Target: 5'- uCGUCGGGGACUuugcCCAGGccgccGCGCaGCCGc -3' miRNA: 3'- uGCGGCUCCUGGu---GGUCC-----UGCG-CGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 46000 | 0.66 | 0.409312 |
Target: 5'- cCGCCGAGGcuCCgAUCAGGACcucgaagucCGCCGu -3' miRNA: 3'- uGCGGCUCCu-GG-UGGUCCUGc--------GCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 46667 | 0.66 | 0.383453 |
Target: 5'- -aGCUGGGGAgCGCgGGGcCGUGUCGc -3' miRNA: 3'- ugCGGCUCCUgGUGgUCCuGCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 47791 | 0.67 | 0.342834 |
Target: 5'- cGCGCUGAGGACCuuCAGucCGUuguugGCCGc -3' miRNA: 3'- -UGCGGCUCCUGGugGUCcuGCG-----CGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 48456 | 0.7 | 0.212104 |
Target: 5'- gUGCCGAcGGucuCCGaCAGGACGCGCUc -3' miRNA: 3'- uGCGGCU-CCu--GGUgGUCCUGCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 50923 | 0.68 | 0.305409 |
Target: 5'- -gGCCGAGGGCCuggACCGaGACuuCGCCAc -3' miRNA: 3'- ugCGGCUCCUGG---UGGUcCUGc-GCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 51082 | 0.69 | 0.258402 |
Target: 5'- cGCGCCGAcuGCCugCAGGACGUuguuCCGc -3' miRNA: 3'- -UGCGGCUccUGGugGUCCUGCGc---GGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 51979 | 0.66 | 0.409312 |
Target: 5'- gACGUgGAGGACCucgcagagACCGuGGACGaGUCAu -3' miRNA: 3'- -UGCGgCUCCUGG--------UGGU-CCUGCgCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 58794 | 0.68 | 0.312637 |
Target: 5'- -gGCCGAGGAuUCACCAau-CGCGUCAc -3' miRNA: 3'- ugCGGCUCCU-GGUGGUccuGCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 60418 | 0.69 | 0.258402 |
Target: 5'- gGCGCUGAGGGCCGCCGcgcuGACaGUuCCAa -3' miRNA: 3'- -UGCGGCUCCUGGUGGUc---CUG-CGcGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 63408 | 0.68 | 0.2845 |
Target: 5'- gACGgCGAGGuCCGCUGGGACuG-GCCGc -3' miRNA: 3'- -UGCgGCUCCuGGUGGUCCUG-CgCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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