Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31790 | 3' | -62.3 | NC_006938.1 | + | 35138 | 0.67 | 0.327477 |
Target: 5'- cAUGCCGAGGuCCA--GGGAgGCGUCc -3' miRNA: 3'- -UGCGGCUCCuGGUggUCCUgCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 41159 | 0.68 | 0.305409 |
Target: 5'- gAUGUCGAGGACCcgGCCAcGGAggaggcgagUGCGCUc -3' miRNA: 3'- -UGCGGCUCCUGG--UGGU-CCU---------GCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 7720 | 0.69 | 0.271199 |
Target: 5'- uCGCUGAGGACCugggccgccuuGCCAGuGuACGCGgCGa -3' miRNA: 3'- uGCGGCUCCUGG-----------UGGUC-C-UGCGCgGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 51082 | 0.69 | 0.258402 |
Target: 5'- cGCGCCGAcuGCCugCAGGACGUuguuCCGc -3' miRNA: 3'- -UGCGGCUccUGGugGUCCUGCGc---GGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 60418 | 0.69 | 0.258402 |
Target: 5'- gGCGCUGAGGGCCGCCGcgcuGACaGUuCCAa -3' miRNA: 3'- -UGCGGCUCCUGGUGGUc---CUG-CGcGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 48456 | 0.7 | 0.212104 |
Target: 5'- gUGCCGAcGGucuCCGaCAGGACGCGCUc -3' miRNA: 3'- uGCGGCU-CCu--GGUgGUCCUGCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 20939 | 0.7 | 0.206846 |
Target: 5'- gACGCCGAGGucucggGCCACCu---CGCGCUg -3' miRNA: 3'- -UGCGGCUCC------UGGUGGuccuGCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 18260 | 0.76 | 0.089447 |
Target: 5'- cGCGCgGAGGGcguCCACCAGGAUGC-CCu -3' miRNA: 3'- -UGCGgCUCCU---GGUGGUCCUGCGcGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 47791 | 0.67 | 0.342834 |
Target: 5'- cGCGCUGAGGACCuuCAGucCGUuguugGCCGc -3' miRNA: 3'- -UGCGGCUCCUGGugGUCcuGCG-----CGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 3602 | 0.67 | 0.350705 |
Target: 5'- cCGCCGuGG--UACCAGGcCGCGUCGa -3' miRNA: 3'- uGCGGCuCCugGUGGUCCuGCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 27049 | 0.66 | 0.412842 |
Target: 5'- cGCGCCGGGGcaguGCCACacuccggagggaCAGGcccaggucacgggcCGCGCCGg -3' miRNA: 3'- -UGCGGCUCC----UGGUG------------GUCCu-------------GCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 26168 | 0.66 | 0.409312 |
Target: 5'- uUGCCGGGGACUccuccgcgcgACCAGcugccACGCaGCCGg -3' miRNA: 3'- uGCGGCUCCUGG----------UGGUCc----UGCG-CGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 37988 | 0.66 | 0.409312 |
Target: 5'- cCGCCGcccugagacgcGGGCCACCAGuGugGgCGCUu -3' miRNA: 3'- uGCGGCu----------CCUGGUGGUC-CugC-GCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 46000 | 0.66 | 0.409312 |
Target: 5'- cCGCCGAGGcuCCgAUCAGGACcucgaagucCGCCGu -3' miRNA: 3'- uGCGGCUCCu-GG-UGGUCCUGc--------GCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 12699 | 0.66 | 0.391952 |
Target: 5'- cGCGCC-AGuGACCcacgggucaCGGGACuGCGCCAg -3' miRNA: 3'- -UGCGGcUC-CUGGug-------GUCCUG-CGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 46667 | 0.66 | 0.383453 |
Target: 5'- -aGCUGGGGAgCGCgGGGcCGUGUCGc -3' miRNA: 3'- ugCGGCUCCUgGUGgUCCuGCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 35593 | 0.66 | 0.375078 |
Target: 5'- gGCGUCGAGGAUCuCgAaGAUGCGCUg -3' miRNA: 3'- -UGCGGCUCCUGGuGgUcCUGCGCGGu -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 18703 | 0.67 | 0.366828 |
Target: 5'- uCGUCucGGuacuucugcGCCGCCucGGACGCGCCGg -3' miRNA: 3'- uGCGGcuCC---------UGGUGGu-CCUGCGCGGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 2836 | 0.67 | 0.358703 |
Target: 5'- cCGCCGAGuaGACCccguCCAGGAUgGCGgCGg -3' miRNA: 3'- uGCGGCUC--CUGGu---GGUCCUG-CGCgGU- -5' |
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31790 | 3' | -62.3 | NC_006938.1 | + | 11148 | 0.77 | 0.076026 |
Target: 5'- cGCGCCGAGGuacuCCAUCAuGGAgaucggcuuguCGCGCCAg -3' miRNA: 3'- -UGCGGCUCCu---GGUGGU-CCU-----------GCGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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