miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31791 3' -55.1 NC_006938.1 + 35150 0.7 0.529353
Target:  5'- -gUCAGGGuuggacaugccgAGGuCCAGGGAgGCGuCCUCCu -3'
miRNA:   3'- cgAGUUCC------------UCC-GGUUCCU-UGC-GGAGG- -5'
31791 3' -55.1 NC_006938.1 + 12982 0.71 0.477859
Target:  5'- aGCcCAAGGAGGCgGgagaggccccGGcGAGCGCCuggUCCa -3'
miRNA:   3'- -CGaGUUCCUCCGgU----------UC-CUUGCGG---AGG- -5'
31791 3' -55.1 NC_006938.1 + 56521 0.74 0.301737
Target:  5'- cGCgUCGAGGAGcCCAAGGucgucgaacuGCGCCUUCu -3'
miRNA:   3'- -CG-AGUUCCUCcGGUUCCu---------UGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 48742 0.67 0.680615
Target:  5'- uGUUCc-GGAcGGCCuuGGu-CGCCUCCa -3'
miRNA:   3'- -CGAGuuCCU-CCGGuuCCuuGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 40685 0.67 0.680615
Target:  5'- aGCUcCGGGGAGcGCaUGAGGuccucgaccGAgGCCUCCa -3'
miRNA:   3'- -CGA-GUUCCUC-CG-GUUCC---------UUgCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 37481 0.66 0.784595
Target:  5'- uGUUgAGGGAGGUCGucAGGcgaucGACGUCUgCCu -3'
miRNA:   3'- -CGAgUUCCUCCGGU--UCC-----UUGCGGA-GG- -5'
31791 3' -55.1 NC_006938.1 + 47854 0.66 0.76469
Target:  5'- gGCUCc----GGCCgGAGGAGagGCCUCCa -3'
miRNA:   3'- -CGAGuuccuCCGG-UUCCUUg-CGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 42533 0.66 0.76469
Target:  5'- --gCAAGGGuuccGGCCGAGGGaguggcagGCGUcgCUCCg -3'
miRNA:   3'- cgaGUUCCU----CCGGUUCCU--------UGCG--GAGG- -5'
31791 3' -55.1 NC_006938.1 + 61009 0.66 0.754532
Target:  5'- aCUCu-GGAGuGCUGAGGucCGCgUCCu -3'
miRNA:   3'- cGAGuuCCUC-CGGUUCCuuGCGgAGG- -5'
31791 3' -55.1 NC_006938.1 + 38256 0.66 0.744251
Target:  5'- --aCAAGGGGaGCCAAGuGGACcauGCCaCCg -3'
miRNA:   3'- cgaGUUCCUC-CGGUUC-CUUG---CGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 16959 0.67 0.723366
Target:  5'- cCUUgcGGAGGUCGuccucgggaguuGGGAgGCGCaCUCCa -3'
miRNA:   3'- cGAGuuCCUCCGGU------------UCCU-UGCG-GAGG- -5'
31791 3' -55.1 NC_006938.1 + 41609 0.67 0.723366
Target:  5'- gGCUCcaGAGGAcGCCAcgucagcaGGGAGCGgCUgCg -3'
miRNA:   3'- -CGAG--UUCCUcCGGU--------UCCUUGCgGAgG- -5'
31791 3' -55.1 NC_006938.1 + 42600 0.67 0.723366
Target:  5'- gGCgUCGAuGGAGuuCGAGGGAacCGCCUCg -3'
miRNA:   3'- -CG-AGUU-CCUCcgGUUCCUU--GCGGAGg -5'
31791 3' -55.1 NC_006938.1 + 31676 0.67 0.712784
Target:  5'- -gUCAGGGAGGUCcuGGucuguCaCCUCCa -3'
miRNA:   3'- cgAGUUCCUCCGGuuCCuu---GcGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 41156 0.67 0.711721
Target:  5'- -gUCGAGGAcccGGCCAcggAGGAggcgaguGCGCUcCCg -3'
miRNA:   3'- cgAGUUCCU---CCGGU---UCCU-------UGCGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 9948 0.83 0.082912
Target:  5'- aGCUCGAcGGAGGCCugauAGGAguugcacgccaGCGUCUCCa -3'
miRNA:   3'- -CGAGUU-CCUCCGGu---UCCU-----------UGCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.