miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31791 3' -55.1 NC_006938.1 + 17405 0.73 0.357245
Target:  5'- cCUCcuggaAGGGAGcGCgGAGGGugGCCUUCg -3'
miRNA:   3'- cGAG-----UUCCUC-CGgUUCCUugCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 49603 0.73 0.374366
Target:  5'- cGCUC------GCCGAGGGAUGCCUCCa -3'
miRNA:   3'- -CGAGuuccucCGGUUCCUUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 19950 0.73 0.383134
Target:  5'- aCUcCAGGGAGGCCugGAGGAcCGUC-CCa -3'
miRNA:   3'- cGA-GUUCCUCCGG--UUCCUuGCGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 18064 0.72 0.395634
Target:  5'- gGCUCAuGGAGGUCGagauccgagcgacgaAGGAGCGUCgggacgcgUCCg -3'
miRNA:   3'- -CGAGUuCCUCCGGU---------------UCCUUGCGG--------AGG- -5'
31791 3' -55.1 NC_006938.1 + 32068 0.71 0.467854
Target:  5'- aCUCGAagaugugacGGAGGUCAAGuGAgcgACGUCUCCc -3'
miRNA:   3'- cGAGUU---------CCUCCGGUUC-CU---UGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 40416 0.71 0.467854
Target:  5'- uCUCAAGcGAGGCCAGaucaccGACGCCgcgCCg -3'
miRNA:   3'- cGAGUUC-CUCCGGUUcc----UUGCGGa--GG- -5'
31791 3' -55.1 NC_006938.1 + 4270 0.71 0.484926
Target:  5'- cGUUCcAGGAGgacgugaacggagaGCCGGuGGAGCGCgUCCa -3'
miRNA:   3'- -CGAGuUCCUC--------------CGGUU-CCUUGCGgAGG- -5'
31791 3' -55.1 NC_006938.1 + 20849 0.68 0.615329
Target:  5'- aGCgCGAGGuGGcCCGAGaccucGGCGUCUCCa -3'
miRNA:   3'- -CGaGUUCCuCC-GGUUCc----UUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 40659 0.68 0.615329
Target:  5'- gGCUC-AGuGGGCCAAGGAcaagaAUGCCaUCg -3'
miRNA:   3'- -CGAGuUCcUCCGGUUCCU-----UGCGG-AGg -5'
31791 3' -55.1 NC_006938.1 + 12888 0.69 0.561216
Target:  5'- cGCUCGccGGGGCCucucc-CGCCUCCu -3'
miRNA:   3'- -CGAGUucCUCCGGuuccuuGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 4159 0.7 0.529353
Target:  5'- aGCUCAuGGccauGGuCCGGGcGGACGgCUCCg -3'
miRNA:   3'- -CGAGUuCCu---CC-GGUUC-CUUGCgGAGG- -5'
31791 3' -55.1 NC_006938.1 + 27184 0.7 0.508484
Target:  5'- -gUCGAGGcGGUCAAGGAggugcucaAC-CCUCCg -3'
miRNA:   3'- cgAGUUCCuCCGGUUCCU--------UGcGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 24284 0.7 0.49818
Target:  5'- uGCUCAuGGAcGGCaaca-AGCGCCUCCa -3'
miRNA:   3'- -CGAGUuCCU-CCGguuccUUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 41609 0.67 0.723366
Target:  5'- gGCUCcaGAGGAcGCCAcgucagcaGGGAGCGgCUgCg -3'
miRNA:   3'- -CGAG--UUCCUcCGGU--------UCCUUGCgGAgG- -5'
31791 3' -55.1 NC_006938.1 + 16959 0.67 0.723366
Target:  5'- cCUUgcGGAGGUCGuccucgggaguuGGGAgGCGCaCUCCa -3'
miRNA:   3'- cGAGuuCCUCCGGU------------UCCU-UGCG-GAGG- -5'
31791 3' -55.1 NC_006938.1 + 38256 0.66 0.744251
Target:  5'- --aCAAGGGGaGCCAAGuGGACcauGCCaCCg -3'
miRNA:   3'- cgaGUUCCUC-CGGUUC-CUUG---CGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 61009 0.66 0.754532
Target:  5'- aCUCu-GGAGuGCUGAGGucCGCgUCCu -3'
miRNA:   3'- cGAGuuCCUC-CGGUUCCuuGCGgAGG- -5'
31791 3' -55.1 NC_006938.1 + 42533 0.66 0.76469
Target:  5'- --gCAAGGGuuccGGCCGAGGGaguggcagGCGUcgCUCCg -3'
miRNA:   3'- cgaGUUCCU----CCGGUUCCU--------UGCG--GAGG- -5'
31791 3' -55.1 NC_006938.1 + 47854 0.66 0.76469
Target:  5'- gGCUCc----GGCCgGAGGAGagGCCUCCa -3'
miRNA:   3'- -CGAGuuccuCCGG-UUCCUUg-CGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 9948 0.83 0.082912
Target:  5'- aGCUCGAcGGAGGCCugauAGGAguugcacgccaGCGUCUCCa -3'
miRNA:   3'- -CGAGUU-CCUCCGGu---UCCU-----------UGCGGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.