miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31791 3' -55.1 NC_006938.1 + 9967 0.67 0.691398
Target:  5'- aGCUCcagGAGGAcucGGCCGcuacGGGAuACGCaaCUCCc -3'
miRNA:   3'- -CGAG---UUCCU---CCGGU----UCCU-UGCG--GAGG- -5'
31791 3' -55.1 NC_006938.1 + 12888 0.69 0.561216
Target:  5'- cGCUCGccGGGGCCucucc-CGCCUCCu -3'
miRNA:   3'- -CGAGUucCUCCGGuuccuuGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 40659 0.68 0.615329
Target:  5'- gGCUC-AGuGGGCCAAGGAcaagaAUGCCaUCg -3'
miRNA:   3'- -CGAGuUCcUCCGGUUCCU-----UGCGG-AGg -5'
31791 3' -55.1 NC_006938.1 + 20849 0.68 0.615329
Target:  5'- aGCgCGAGGuGGcCCGAGaccucGGCGUCUCCa -3'
miRNA:   3'- -CGaGUUCCuCC-GGUUCc----UUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 30615 0.68 0.615329
Target:  5'- --cCGAGGAGGUCGucGGGAgcacgaacGCGCCcgagCCg -3'
miRNA:   3'- cgaGUUCCUCCGGU--UCCU--------UGCGGa---GG- -5'
31791 3' -55.1 NC_006938.1 + 50866 0.68 0.634955
Target:  5'- aGCUCGGcaccgacGGAgagaucacGGCCGAGGcgugcucAACGCCUuCCg -3'
miRNA:   3'- -CGAGUU-------CCU--------CCGGUUCC-------UUGCGGA-GG- -5'
31791 3' -55.1 NC_006938.1 + 9712 0.68 0.637136
Target:  5'- uGUUCGagcaggagaAGGAGGCCAAGuccaAGCGCCg-- -3'
miRNA:   3'- -CGAGU---------UCCUCCGGUUCc---UUGCGGagg -5'
31791 3' -55.1 NC_006938.1 + 28952 0.68 0.669787
Target:  5'- gGCUCGAGGccgcuGGCCugggcGGGACagaGCCggUCCg -3'
miRNA:   3'- -CGAGUUCCu----CCGGuu---CCUUG---CGG--AGG- -5'
31791 3' -55.1 NC_006938.1 + 16575 0.68 0.674123
Target:  5'- uGCUCAAagagccgaucucGGAGGCUcgucccuggacccagAAGGAAUGCauuggUCCa -3'
miRNA:   3'- -CGAGUU------------CCUCCGG---------------UUCCUUGCGg----AGG- -5'
31791 3' -55.1 NC_006938.1 + 4159 0.7 0.529353
Target:  5'- aGCUCAuGGccauGGuCCGGGcGGACGgCUCCg -3'
miRNA:   3'- -CGAGUuCCu---CC-GGUUC-CUUGCgGAGG- -5'
31791 3' -55.1 NC_006938.1 + 27184 0.7 0.508484
Target:  5'- -gUCGAGGcGGUCAAGGAggugcucaAC-CCUCCg -3'
miRNA:   3'- cgAGUUCCuCCGGUUCCU--------UGcGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 24284 0.7 0.49818
Target:  5'- uGCUCAuGGAcGGCaaca-AGCGCCUCCa -3'
miRNA:   3'- -CGAGUuCCU-CCGguuccUUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 35018 0.75 0.265644
Target:  5'- cUUCGAGGAGGagauccgcaagauCCAggAGGAggACGCCUCCc -3'
miRNA:   3'- cGAGUUCCUCC-------------GGU--UCCU--UGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 17405 0.73 0.357245
Target:  5'- cCUCcuggaAGGGAGcGCgGAGGGugGCCUUCg -3'
miRNA:   3'- cGAG-----UUCCUC-CGgUUCCUugCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 49603 0.73 0.374366
Target:  5'- cGCUC------GCCGAGGGAUGCCUCCa -3'
miRNA:   3'- -CGAGuuccucCGGUUCCUUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 19950 0.73 0.383134
Target:  5'- aCUcCAGGGAGGCCugGAGGAcCGUC-CCa -3'
miRNA:   3'- cGA-GUUCCUCCGG--UUCCUuGCGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 18064 0.72 0.395634
Target:  5'- gGCUCAuGGAGGUCGagauccgagcgacgaAGGAGCGUCgggacgcgUCCg -3'
miRNA:   3'- -CGAGUuCCUCCGGU---------------UCCUUGCGG--------AGG- -5'
31791 3' -55.1 NC_006938.1 + 32068 0.71 0.467854
Target:  5'- aCUCGAagaugugacGGAGGUCAAGuGAgcgACGUCUCCc -3'
miRNA:   3'- cGAGUU---------CCUCCGGUUC-CU---UGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 40416 0.71 0.467854
Target:  5'- uCUCAAGcGAGGCCAGaucaccGACGCCgcgCCg -3'
miRNA:   3'- cGAGUUC-CUCCGGUUcc----UUGCGGa--GG- -5'
31791 3' -55.1 NC_006938.1 + 4270 0.71 0.484926
Target:  5'- cGUUCcAGGAGgacgugaacggagaGCCGGuGGAGCGCgUCCa -3'
miRNA:   3'- -CGAGuUCCUC--------------CGGUU-CCUUGCGgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.