Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31791 | 3' | -55.1 | NC_006938.1 | + | 5609 | 1.15 | 0.000498 |
Target: 5'- aGCUCAAGGAGGCCAAGGAACGCCUCCg -3' miRNA: 3'- -CGAGUUCCUCCGGUUCCUUGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 9948 | 0.83 | 0.082912 |
Target: 5'- aGCUCGAcGGAGGCCugauAGGAguugcacgccaGCGUCUCCa -3' miRNA: 3'- -CGAGUU-CCUCCGGu---UCCU-----------UGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 35018 | 0.75 | 0.265644 |
Target: 5'- cUUCGAGGAGGagauccgcaagauCCAggAGGAggACGCCUCCc -3' miRNA: 3'- cGAGUUCCUCC-------------GGU--UCCU--UGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 56521 | 0.74 | 0.301737 |
Target: 5'- cGCgUCGAGGAGcCCAAGGucgucgaacuGCGCCUUCu -3' miRNA: 3'- -CG-AGUUCCUCcGGUUCCu---------UGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 17405 | 0.73 | 0.357245 |
Target: 5'- cCUCcuggaAGGGAGcGCgGAGGGugGCCUUCg -3' miRNA: 3'- cGAG-----UUCCUC-CGgUUCCUugCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 49603 | 0.73 | 0.374366 |
Target: 5'- cGCUC------GCCGAGGGAUGCCUCCa -3' miRNA: 3'- -CGAGuuccucCGGUUCCUUGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 19950 | 0.73 | 0.383134 |
Target: 5'- aCUcCAGGGAGGCCugGAGGAcCGUC-CCa -3' miRNA: 3'- cGA-GUUCCUCCGG--UUCCUuGCGGaGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 18064 | 0.72 | 0.395634 |
Target: 5'- gGCUCAuGGAGGUCGagauccgagcgacgaAGGAGCGUCgggacgcgUCCg -3' miRNA: 3'- -CGAGUuCCUCCGGU---------------UCCUUGCGG--------AGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 40416 | 0.71 | 0.467854 |
Target: 5'- uCUCAAGcGAGGCCAGaucaccGACGCCgcgCCg -3' miRNA: 3'- cGAGUUC-CUCCGGUUcc----UUGCGGa--GG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 32068 | 0.71 | 0.467854 |
Target: 5'- aCUCGAagaugugacGGAGGUCAAGuGAgcgACGUCUCCc -3' miRNA: 3'- cGAGUU---------CCUCCGGUUC-CU---UGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 12982 | 0.71 | 0.477859 |
Target: 5'- aGCcCAAGGAGGCgGgagaggccccGGcGAGCGCCuggUCCa -3' miRNA: 3'- -CGaGUUCCUCCGgU----------UC-CUUGCGG---AGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 4270 | 0.71 | 0.484926 |
Target: 5'- cGUUCcAGGAGgacgugaacggagaGCCGGuGGAGCGCgUCCa -3' miRNA: 3'- -CGAGuUCCUC--------------CGGUU-CCUUGCGgAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 24284 | 0.7 | 0.49818 |
Target: 5'- uGCUCAuGGAcGGCaaca-AGCGCCUCCa -3' miRNA: 3'- -CGAGUuCCU-CCGguuccUUGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 27184 | 0.7 | 0.508484 |
Target: 5'- -gUCGAGGcGGUCAAGGAggugcucaAC-CCUCCg -3' miRNA: 3'- cgAGUUCCuCCGGUUCCU--------UGcGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 4159 | 0.7 | 0.529353 |
Target: 5'- aGCUCAuGGccauGGuCCGGGcGGACGgCUCCg -3' miRNA: 3'- -CGAGUuCCu---CC-GGUUC-CUUGCgGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 35150 | 0.7 | 0.529353 |
Target: 5'- -gUCAGGGuuggacaugccgAGGuCCAGGGAgGCGuCCUCCu -3' miRNA: 3'- cgAGUUCC------------UCC-GGUUCCU-UGC-GGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 37536 | 0.7 | 0.550529 |
Target: 5'- aGCUCGccccaGAcGCCGAGGGAUGCCUUg -3' miRNA: 3'- -CGAGUuc---CUcCGGUUCCUUGCGGAGg -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 12888 | 0.69 | 0.561216 |
Target: 5'- cGCUCGccGGGGCCucucc-CGCCUCCu -3' miRNA: 3'- -CGAGUucCUCCGGuuccuuGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 4151 | 0.69 | 0.561216 |
Target: 5'- -gUCGGGGAGGUC---GAGCGCgUCCu -3' miRNA: 3'- cgAGUUCCUCCGGuucCUUGCGgAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 61192 | 0.69 | 0.571958 |
Target: 5'- uCUCGGGGaAGaGCguGGGGACaGCCUCg -3' miRNA: 3'- cGAGUUCC-UC-CGguUCCUUG-CGGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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