miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31791 3' -55.1 NC_006938.1 + 4151 0.69 0.561216
Target:  5'- -gUCGGGGAGGUC---GAGCGCgUCCu -3'
miRNA:   3'- cgAGUUCCUCCGGuucCUUGCGgAGG- -5'
31791 3' -55.1 NC_006938.1 + 4159 0.7 0.529353
Target:  5'- aGCUCAuGGccauGGuCCGGGcGGACGgCUCCg -3'
miRNA:   3'- -CGAGUuCCu---CC-GGUUC-CUUGCgGAGG- -5'
31791 3' -55.1 NC_006938.1 + 4270 0.71 0.484926
Target:  5'- cGUUCcAGGAGgacgugaacggagaGCCGGuGGAGCGCgUCCa -3'
miRNA:   3'- -CGAGuUCCUC--------------CGGUU-CCUUGCGgAGG- -5'
31791 3' -55.1 NC_006938.1 + 5609 1.15 0.000498
Target:  5'- aGCUCAAGGAGGCCAAGGAACGCCUCCg -3'
miRNA:   3'- -CGAGUUCCUCCGGUUCCUUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 7160 0.69 0.59358
Target:  5'- aGUUCGGGGAGggagguggaGCCGGGGcGACGCC-Ca -3'
miRNA:   3'- -CGAGUUCCUC---------CGGUUCC-UUGCGGaGg -5'
31791 3' -55.1 NC_006938.1 + 7577 0.66 0.774715
Target:  5'- gGC-CAAGcaccuGGCCGAGG-GCGUCUCg -3'
miRNA:   3'- -CGaGUUCcu---CCGGUUCCuUGCGGAGg -5'
31791 3' -55.1 NC_006938.1 + 8832 0.66 0.733858
Target:  5'- cCUCAAGGAcGGCgaagagcacuaCAAGGAGCugcgagagauCCUCCu -3'
miRNA:   3'- cGAGUUCCU-CCG-----------GUUCCUUGc---------GGAGG- -5'
31791 3' -55.1 NC_006938.1 + 9712 0.68 0.637136
Target:  5'- uGUUCGagcaggagaAGGAGGCCAAGuccaAGCGCCg-- -3'
miRNA:   3'- -CGAGU---------UCCUCCGGUUCc---UUGCGGagg -5'
31791 3' -55.1 NC_006938.1 + 9948 0.83 0.082912
Target:  5'- aGCUCGAcGGAGGCCugauAGGAguugcacgccaGCGUCUCCa -3'
miRNA:   3'- -CGAGUU-CCUCCGGu---UCCU-----------UGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 9967 0.67 0.691398
Target:  5'- aGCUCcagGAGGAcucGGCCGcuacGGGAuACGCaaCUCCc -3'
miRNA:   3'- -CGAG---UUCCU---CCGGU----UCCU-UGCG--GAGG- -5'
31791 3' -55.1 NC_006938.1 + 12888 0.69 0.561216
Target:  5'- cGCUCGccGGGGCCucucc-CGCCUCCu -3'
miRNA:   3'- -CGAGUucCUCCGGuuccuuGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 12982 0.71 0.477859
Target:  5'- aGCcCAAGGAGGCgGgagaggccccGGcGAGCGCCuggUCCa -3'
miRNA:   3'- -CGaGUUCCUCCGgU----------UC-CUUGCGG---AGG- -5'
31791 3' -55.1 NC_006938.1 + 16575 0.68 0.674123
Target:  5'- uGCUCAAagagccgaucucGGAGGCUcgucccuggacccagAAGGAAUGCauuggUCCa -3'
miRNA:   3'- -CGAGUU------------CCUCCGG---------------UUCCUUGCGg----AGG- -5'
31791 3' -55.1 NC_006938.1 + 16959 0.67 0.723366
Target:  5'- cCUUgcGGAGGUCGuccucgggaguuGGGAgGCGCaCUCCa -3'
miRNA:   3'- cGAGuuCCUCCGGU------------UCCU-UGCG-GAGG- -5'
31791 3' -55.1 NC_006938.1 + 17405 0.73 0.357245
Target:  5'- cCUCcuggaAGGGAGcGCgGAGGGugGCCUUCg -3'
miRNA:   3'- cGAG-----UUCCUC-CGgUUCCUugCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 18064 0.72 0.395634
Target:  5'- gGCUCAuGGAGGUCGagauccgagcgacgaAGGAGCGUCgggacgcgUCCg -3'
miRNA:   3'- -CGAGUuCCUCCGGU---------------UCCUUGCGG--------AGG- -5'
31791 3' -55.1 NC_006938.1 + 19950 0.73 0.383134
Target:  5'- aCUcCAGGGAGGCCugGAGGAcCGUC-CCa -3'
miRNA:   3'- cGA-GUUCCUCCGG--UUCCUuGCGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 20849 0.68 0.615329
Target:  5'- aGCgCGAGGuGGcCCGAGaccucGGCGUCUCCa -3'
miRNA:   3'- -CGaGUUCCuCC-GGUUCc----UUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 21395 0.68 0.637136
Target:  5'- aGC-CGGGGAguGGCCcuucagcuucuuGAGGAucCGCUUCCg -3'
miRNA:   3'- -CGaGUUCCU--CCGG------------UUCCUu-GCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 24082 0.66 0.774715
Target:  5'- aUUCAucGGGAGGgaCAAGuGAGgGaCCUCCg -3'
miRNA:   3'- cGAGU--UCCUCCg-GUUC-CUUgC-GGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.