miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31791 3' -55.1 NC_006938.1 + 61386 0.66 0.733858
Target:  5'- cCUCGAcGGGGUCAgccuAGGAACGCagaCCa -3'
miRNA:   3'- cGAGUUcCUCCGGU----UCCUUGCGga-GG- -5'
31791 3' -55.1 NC_006938.1 + 61192 0.69 0.571958
Target:  5'- uCUCGGGGaAGaGCguGGGGACaGCCUCg -3'
miRNA:   3'- cGAGUUCC-UC-CGguUCCUUG-CGGAGg -5'
31791 3' -55.1 NC_006938.1 + 61009 0.66 0.754532
Target:  5'- aCUCu-GGAGuGCUGAGGucCGCgUCCu -3'
miRNA:   3'- cGAGuuCCUC-CGGUUCCuuGCGgAGG- -5'
31791 3' -55.1 NC_006938.1 + 56521 0.74 0.301737
Target:  5'- cGCgUCGAGGAGcCCAAGGucgucgaacuGCGCCUUCu -3'
miRNA:   3'- -CG-AGUUCCUCcGGUUCCu---------UGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 55888 0.66 0.784595
Target:  5'- aGCgagCGAGGGcuccGGCCAGGuGcccggacaccGugGCCUCUg -3'
miRNA:   3'- -CGa--GUUCCU----CCGGUUC-C----------UugCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 55659 0.66 0.76469
Target:  5'- gGCggCAAGGGcGGCCuggGAGGAGgGCC-Ca -3'
miRNA:   3'- -CGa-GUUCCU-CCGG---UUCCUUgCGGaGg -5'
31791 3' -55.1 NC_006938.1 + 55411 0.66 0.774715
Target:  5'- cGCUCGccgcAGGcGGCCuGGGcuucuCGCC-CCa -3'
miRNA:   3'- -CGAGU----UCCuCCGGuUCCuu---GCGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 54673 0.68 0.637136
Target:  5'- cGCUCGcacGGuGAcGGCCuuguuGAACGCCUCUc -3'
miRNA:   3'- -CGAGU---UC-CU-CCGGuuc--CUUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 50866 0.68 0.634955
Target:  5'- aGCUCGGcaccgacGGAgagaucacGGCCGAGGcgugcucAACGCCUuCCg -3'
miRNA:   3'- -CGAGUU-------CCU--------CCGGUUCC-------UUGCGGA-GG- -5'
31791 3' -55.1 NC_006938.1 + 49603 0.73 0.374366
Target:  5'- cGCUC------GCCGAGGGAUGCCUCCa -3'
miRNA:   3'- -CGAGuuccucCGGUUCCUUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 48742 0.67 0.680615
Target:  5'- uGUUCc-GGAcGGCCuuGGu-CGCCUCCa -3'
miRNA:   3'- -CGAGuuCCU-CCGGuuCCuuGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 48404 0.66 0.774715
Target:  5'- -aUCGAGGcGGCCAcGGccuacAACaCCUCCu -3'
miRNA:   3'- cgAGUUCCuCCGGUuCC-----UUGcGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 47854 0.66 0.76469
Target:  5'- gGCUCc----GGCCgGAGGAGagGCCUCCa -3'
miRNA:   3'- -CGAGuuccuCCGG-UUCCUUg-CGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 42600 0.67 0.723366
Target:  5'- gGCgUCGAuGGAGuuCGAGGGAacCGCCUCg -3'
miRNA:   3'- -CG-AGUU-CCUCcgGUUCCUU--GCGGAGg -5'
31791 3' -55.1 NC_006938.1 + 42533 0.66 0.76469
Target:  5'- --gCAAGGGuuccGGCCGAGGGaguggcagGCGUcgCUCCg -3'
miRNA:   3'- cgaGUUCCU----CCGGUUCCU--------UGCG--GAGG- -5'
31791 3' -55.1 NC_006938.1 + 41609 0.67 0.723366
Target:  5'- gGCUCcaGAGGAcGCCAcgucagcaGGGAGCGgCUgCg -3'
miRNA:   3'- -CGAG--UUCCUcCGGU--------UCCUUGCgGAgG- -5'
31791 3' -55.1 NC_006938.1 + 41156 0.67 0.711721
Target:  5'- -gUCGAGGAcccGGCCAcggAGGAggcgaguGCGCUcCCg -3'
miRNA:   3'- cgAGUUCCU---CCGGU---UCCU-------UGCGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 40685 0.67 0.680615
Target:  5'- aGCUcCGGGGAGcGCaUGAGGuccucgaccGAgGCCUCCa -3'
miRNA:   3'- -CGA-GUUCCUC-CG-GUUCC---------UUgCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 40659 0.68 0.615329
Target:  5'- gGCUC-AGuGGGCCAAGGAcaagaAUGCCaUCg -3'
miRNA:   3'- -CGAGuUCcUCCGGUUCCU-----UGCGG-AGg -5'
31791 3' -55.1 NC_006938.1 + 40579 0.66 0.774715
Target:  5'- -aUCcuGGAGGCCucggucGAGGAccucAUGCgCUCCc -3'
miRNA:   3'- cgAGuuCCUCCGG------UUCCU----UGCG-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.