Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31791 | 3' | -55.1 | NC_006938.1 | + | 7160 | 0.69 | 0.59358 |
Target: 5'- aGUUCGGGGAGggagguggaGCCGGGGcGACGCC-Ca -3' miRNA: 3'- -CGAGUUCCUC---------CGGUUCC-UUGCGGaGg -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 40659 | 0.68 | 0.615329 |
Target: 5'- gGCUC-AGuGGGCCAAGGAcaagaAUGCCaUCg -3' miRNA: 3'- -CGAGuUCcUCCGGUUCCU-----UGCGG-AGg -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 20849 | 0.68 | 0.615329 |
Target: 5'- aGCgCGAGGuGGcCCGAGaccucGGCGUCUCCa -3' miRNA: 3'- -CGaGUUCCuCC-GGUUCc----UUGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 30615 | 0.68 | 0.615329 |
Target: 5'- --cCGAGGAGGUCGucGGGAgcacgaacGCGCCcgagCCg -3' miRNA: 3'- cgaGUUCCUCCGGU--UCCU--------UGCGGa---GG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 50866 | 0.68 | 0.634955 |
Target: 5'- aGCUCGGcaccgacGGAgagaucacGGCCGAGGcgugcucAACGCCUuCCg -3' miRNA: 3'- -CGAGUU-------CCU--------CCGGUUCC-------UUGCGGA-GG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 9712 | 0.68 | 0.637136 |
Target: 5'- uGUUCGagcaggagaAGGAGGCCAAGuccaAGCGCCg-- -3' miRNA: 3'- -CGAGU---------UCCUCCGGUUCc---UUGCGGagg -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 21395 | 0.68 | 0.637136 |
Target: 5'- aGC-CGGGGAguGGCCcuucagcuucuuGAGGAucCGCUUCCg -3' miRNA: 3'- -CGaGUUCCU--CCGG------------UUCCUu-GCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 54673 | 0.68 | 0.637136 |
Target: 5'- cGCUCGcacGGuGAcGGCCuuguuGAACGCCUCUc -3' miRNA: 3'- -CGAGU---UC-CU-CCGGuuc--CUUGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 37838 | 0.68 | 0.658924 |
Target: 5'- aGCaUCAGGGcaucgucguGGGCCucGGGGAUGaCCUUCu -3' miRNA: 3'- -CG-AGUUCC---------UCCGGu-UCCUUGC-GGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 28952 | 0.68 | 0.669787 |
Target: 5'- gGCUCGAGGccgcuGGCCugggcGGGACagaGCCggUCCg -3' miRNA: 3'- -CGAGUUCCu----CCGGuu---CCUUG---CGG--AGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 16575 | 0.68 | 0.674123 |
Target: 5'- uGCUCAAagagccgaucucGGAGGCUcgucccuggacccagAAGGAAUGCauuggUCCa -3' miRNA: 3'- -CGAGUU------------CCUCCGG---------------UUCCUUGCGg----AGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 40685 | 0.67 | 0.680615 |
Target: 5'- aGCUcCGGGGAGcGCaUGAGGuccucgaccGAgGCCUCCa -3' miRNA: 3'- -CGA-GUUCCUC-CG-GUUCC---------UUgCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 48742 | 0.67 | 0.680615 |
Target: 5'- uGUUCc-GGAcGGCCuuGGu-CGCCUCCa -3' miRNA: 3'- -CGAGuuCCU-CCGGuuCCuuGCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 9967 | 0.67 | 0.691398 |
Target: 5'- aGCUCcagGAGGAcucGGCCGcuacGGGAuACGCaaCUCCc -3' miRNA: 3'- -CGAG---UUCCU---CCGGU----UCCU-UGCG--GAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 41156 | 0.67 | 0.711721 |
Target: 5'- -gUCGAGGAcccGGCCAcggAGGAggcgaguGCGCUcCCg -3' miRNA: 3'- cgAGUUCCU---CCGGU---UCCU-------UGCGGaGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 31676 | 0.67 | 0.712784 |
Target: 5'- -gUCAGGGAGGUCcuGGucuguCaCCUCCa -3' miRNA: 3'- cgAGUUCCUCCGGuuCCuu---GcGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 16959 | 0.67 | 0.723366 |
Target: 5'- cCUUgcGGAGGUCGuccucgggaguuGGGAgGCGCaCUCCa -3' miRNA: 3'- cGAGuuCCUCCGGU------------UCCU-UGCG-GAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 41609 | 0.67 | 0.723366 |
Target: 5'- gGCUCcaGAGGAcGCCAcgucagcaGGGAGCGgCUgCg -3' miRNA: 3'- -CGAG--UUCCUcCGGU--------UCCUUGCgGAgG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 28473 | 0.67 | 0.723366 |
Target: 5'- cCUCGAGaucGAcccGGCCAagaaggAGGAGCuCCUCCg -3' miRNA: 3'- cGAGUUC---CU---CCGGU------UCCUUGcGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 42600 | 0.67 | 0.723366 |
Target: 5'- gGCgUCGAuGGAGuuCGAGGGAacCGCCUCg -3' miRNA: 3'- -CG-AGUU-CCUCcgGUUCCUU--GCGGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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